| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4063563 | NA (NA) | 10 (0.080) | 6/164 | NT | NA | noncoding (45/75 nt) | REP296 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP296 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4063593 | NA (NA) | noncoding (75/75 nt) | REP296 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP296 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
AGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4063466‑4063563‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTGATACGGTTTTCGTTGGCCGGATTAAGCACATCCGGCCATTAATTAAGCTTCAGCCGCCAGCATC < NC_000913/4063593‑4063491 AGCGTATTAGCCGACGTAAGAAAGAGATGCTGGCGGGTGAAGCTTAATTTATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGC < 2:839882/100‑1AGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGC < 2:887347/100‑1AGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGC > 2:2909615/1‑100AGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGC > 2:265251/1‑100 CGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCG > 1:2131235/1‑100 CGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCG > 2:3706706/1‑100 TATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGA > 1:2025823/1‑100 ATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGAT < 1:1017558/100‑1 TTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGA < 2:3715305/98‑1 GATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCC < 1:2584295/100‑1 GATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCC < 1:256507/100‑1 GATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCC < 2:478648/100‑1 TGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGG < 2:1897829/100‑1 GCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAGAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGC < 1:49427/100‑1 GCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGC < 1:3282559/100‑1 GCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGC < 1:3169391/100‑1 GCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGC > 2:3169413/1‑100 GCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAC < 1:2107025/100‑1 TAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTGATACGGT < 2:1730102/100‑1 tgcgGGATGCGGCGTAAACGCCTTATGCGGCCTACGGTTGATACGGTTTTCGTTGGCCGGATTAAGCACATCCGGCCATTAATTAAGCTTCAGCCGCCAG < 1:3548830/96‑1 CGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTGATACGGTTTTCGTTGGCCGGATTAAGCACATCCGGCCATTAATTAAGCTTCAGCCGCCAGCAT < 2:3222609/100‑1 GGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTGATACGGTTTTCGTTGGCCGGATTAAGCACATCCGGCCATTAATTAAGCTTCAGCCGCCAGCATC < 1:768302/100‑1 AGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACCGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4063466‑4063563‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTGATACGGTTTTCGTTGGCCGGATTAAGCACATCCGGCCATTAATTAAGCTTCAGCCGCCAGCATC < NC_000913/4063593‑4063491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |