New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	409056 =	NA (NA)	4 (0.030)	3/164	NT	NA	noncoding (5/37 nt)	REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	409089 =	NA (NA)					intergenic (+139/+19)	ykiA/rdgC	pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function

CAGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/409160‑409056 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGAAAT  >  NC_000913/409089‑409187                                                                                                                                                                                                              CAGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTAT                                                                                                          >  2:3697465/1‑100   GCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCC                                                                                                        <  2:537032/100‑1    CGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCG                                                                                                       <  2:1917103/100‑1    CGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCG                                                                                                       <  2:448208/100‑1    CGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCG                                                                                                       >  1:462895/1‑100    CGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCG                                                                                                       >  1:2352398/1‑100    CGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCG                                                                                                       >  1:2579971/1‑100    CGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCG                                                                                                       >  2:3369764/1‑100     GTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGG                                                                                                      >  1:1662090/1‑100     GTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGG                                                                                                      >  2:2812034/1‑100      TTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGC                                                                                                     <  2:1380702/100‑1      TTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTCAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGC                                                                                                     <  2:2629367/100‑1         ATTCAACACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATCTTCCTTTCATGCCGGATCCGCCGCCTGCCGCGTCTTTTCCG                                                                                                       >  1:2215765/1‑95                                                                     TAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAA                                      >  1:1359319/1‑100                                                                       ATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATT                                    >  1:240407/1‑100                                                                       ATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATT                                    >  2:1181200/1‑100                                                                         GCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAA                                  >  1:993681/1‑100                                                                                                   ATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGA        >  1:381589/1‑100                                                                                                   ATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGA        >  1:173705/1‑100                                                                                                     CCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCTGTTCACCAGTCATCAGGATG      <  1:2287155/100‑1                                                                                                      CGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATAAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGA     >  2:714862/1‑100                                                                                                      CGGCACTAAAGGCAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCACTTCACCAGTCATCAGGct       >  1:279199/1‑96                                                                                                       GGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGAA    >  1:1974550/1‑100                                                                                                         CATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGAAAT  >  2:2359714/1‑100                                                                                                         CATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGAAAT  >  2:679209/1‑100                                                                                                                                                                                                              CAGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/409160‑409056 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGAAAT  >  NC_000913/409089‑409187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.