New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1508794NA (NA)7 (0.060) 7/166 NT NA noncoding (4/33 nt) REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 1508823 NA (NA)noncoding (33/33 nt) REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences

TAAGTCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTgccgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1508696‑1508794
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCAA  <  NC_000913/1508823‑1508722
                                                                                                                                                                                                         
TAAGTCCGGATGAGCTGCTGAAAACATTGCCGAAGCGTAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTG                                                                                                       <  1:2512093/100‑1
  AGTCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCC                                                                                                     <  1:585236/100‑1
    TCCGGATGAGCTGCTGAAAACATTGCCGAAGCTAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCG                                                                                                    <  1:401480/99‑1
    TCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGG                                                                                                   <  2:3347139/100‑1
                           TGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGG                                                                            <  2:3528377/100‑1
                            GCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGC                                                                           <  1:3185710/100‑1
                              CGAAGCGAAAAGGGCAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAG                                                                         <  1:2546901/100‑1
                               GAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAGG                                                                        <  1:2157551/100‑1
                                AAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAGGC                                                                       <  2:1746533/100‑1
                                 AGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCA                                                                      <  1:2416404/100‑1
                                         GGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATG                                                              <  2:121842/100‑1
                                                                                                   GCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGC    >  2:1671161/1‑100
                                                                                                   GCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGC    >  2:967414/1‑100
                                                                                                   GCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGG     >  2:799748/1‑99
                                                                                                    CCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCA   <  2:3204551/100‑1
                                                                                                     CGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCAA  >  2:1522935/1‑100
                                                                                                                                                                                                         
TAAGTCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTgccgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1508696‑1508794
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCAA  <  NC_000913/1508823‑1508722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.