New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2842423 =	NA (NA)	9 (0.070)	7/164	NT	NA	noncoding (1/79 nt)	REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 4554508	NA (NA)					noncoding (4/34 nt)	REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences

ACCAGCTCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2842528‑2842423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGGTCA  <  NC_000913/4554508‑4554411                                                                                                                                                                                                              ACCAGCTCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCA                                                                                                          >  2:3518090/1‑100  CCAGCTCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCAT                                                                                                         >  2:3496878/1‑100   CAGCTCTGATGCCAAATGCGAAGTTGCCCGATGCGCTGCGCGTATCGGGCCTTCATGGTTCGAGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATC                                                                                                        <  1:3040759/100‑1    AGCTCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCC                                                                                                       <  2:2051937/100‑1     gaTCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTCCGACATGTAGGCGGGATAAGGCGTTCACGCCGCATCCG                                                                                                      >  1:2226210/3‑100     GCTCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCG                                                                                                      >  2:917755/1‑100     GCTCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCG                                                                                                      <  2:765147/100‑1      CTCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGG                                                                                                     >  2:1671277/1‑100      CTCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGG                                                                                                     >  2:901398/1‑100       TCTGCTTCCAAATGCTAAATTGCCCGCTGCGCTGGGCTTATCGGGCCTTCATGGTTCGTGCGACCTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                    <  1:1689937/100‑1       TCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                    <  1:787531/100‑1       TCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                    <  2:2794957/100‑1       TCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                    <  1:1555106/100‑1       TCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                    <  2:3193999/100‑1        CTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGCC                                                                                                   <  2:2280847/100‑1         TGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGCCT                                                                                                  <  1:2201651/100‑1         TGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCCc                                                                                                  >  2:3392538/1‑99                                                                          TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACG                                 >  1:3147575/1‑100                                                                           AGGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCAGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGT                                >  2:627982/1‑100                                                                            GGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCGCCCGTTAATCTGAAACTATATCATTAGCAATGGAAGTTGGCAAGT                                >  1:3276717/1‑99                                                                            GGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTA                               >  1:2926672/1‑100                                                                             GCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACAATTAGCACTGGAAGTTGGCACGTAC                              >  1:709789/1‑100                                                                             GCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCAGTTAATCTCAAACTAAACCATTAGCACTGGAAGTTGGCACGTAC                              >  1:3487406/1‑100                                                                              CCGGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACA                             >  2:2045305/1‑100                                                                                GGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGG                           >  1:2808613/1‑100                                                                                             ACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAAC              <  2:2808632/100‑1                                                                                               GCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGA            >  2:1903923/1‑100                                                                                                    ATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACT       <  1:332549/100‑1                                                                                                      CCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGG     <  2:3137028/100‑1                                                                                                      CCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGG     >  2:1050503/1‑100                                                                                                      CCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGG     <  2:33484/100‑1                                                                                                      CCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGG     >  2:3637540/1‑100                                                                                                      CCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGG     >  1:3011800/1‑100                                                                                                       CGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGGT    >  2:3674721/1‑100                                                                                                       CGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGGT    <  2:951057/100‑1                                                                                                       CGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGG     >  2:1935844/1‑99                                                                                                       CGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGG     >  1:3069164/1‑99                                                                                                       CGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGG     >  1:1915810/1‑99                                                                                                       CGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGAGCAAAAAAACGAAAACTGGT    <  1:3255815/100‑1                                                                                                        GGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGGTC   <  2:3438057/100‑1                                                                                                        GGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGGTC   >  1:2559798/1‑100                                                                                                         GCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGGTCA  <  1:249558/100‑1                                                                                                                                                                                                              ACCAGCTCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGCCTTCATGGTTCGTGCGACATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2842528‑2842423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGGTGGGCAAAAAAACGAAAACTGGTCA  <  NC_000913/4554508‑4554411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.