| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4289212 | 132 (0.940) | 7 (0.050) | 7/184 | 16.8 | 5.3% | intergenic (+12/‑33) | nrfA/nrfB | nitrite reductase, formate‑dependent, cytochrome/nitrite reductase, formate‑dependent, penta‑heme cytochrome c |
| ? | NC_000913 | = 4289220 | 129 (0.990) | intergenic (+20/‑25) | nrfA/nrfB | nitrite reductase, formate‑dependent, cytochrome/nitrite reductase, formate‑dependent, penta‑heme cytochrome c | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4289108‑4289212‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccgccCCTTGCGAGGCGGAACGGGGTTATTGGCTTAACAGACCGTTTTTACGTGCCTGTTCTTCCCACTGCGGGATCACCGTTTTGATGAAGTCCTGCTTCT < NC_000913/4289220‑4289124 GAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTT > 2:460815/1‑100GAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTT > 2:1154357/1‑100GAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTT > 1:1765791/1‑100 AACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTC > 1:877467/1‑100 AACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTC > 2:1010166/1‑100 AACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTC > 1:2995357/1‑100 ACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCC < 2:1783132/100‑1 AAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGC > 1:1002856/1‑100 AATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCC < 2:1135899/100‑1 CCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCCCCTTGCGA > 2:1961631/1‑100 ACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCCCCTTGCGAGGCGGAACGGGGTTATTGGCTTA < 1:1164149/100‑1 GTGATCCCGCAGTGGCAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCCCCTTGCGAGGCGGAACGGGGTTATTGGCTTAACA < 2:3464377/100‑1 ATCCCGCAGTGGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCCCCTTGCGAGGCGGAACGGGGTTATTGGCTTAACAGAC < 1:2841347/100‑1 GGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCCCCTTGCGAGGCGGAACGGGGTTATTGGCTTAACAGACCGTTTTTACG < 1:1154353/100‑1 AGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCCCCTTTCGAGGCGGAACGGGGTTATTGGCTTAACAGACCGTTTTTACGTGCC < 1:1961616/100‑1 GCCAATAACCCCGTTCCGCCCCTTGCGAGGCGGAACGGGGTTATTGGCTTAACAGACCGTTTTTACGTGCCTGTTCTTCCCACTGCGCGATCACCGTTTT < 2:2309915/100‑1 CCGCCCCTTGCGAGGCGGAACGGGGTTATTGGCTTAACAGACCGTTTTTACGTGCCTGTTCTTCCCACTGCGGGATCACCGTTTTGATGAAGTCCTGCTT > 1:1665996/1‑100 CCGCCCCTTGCGAGGCGGAACGGGGTTATTGGCTTAACAGACCGTTTTTACGTGCCTGTTCTTCCCACTGCGGGATCACCGTTTTGATGAAGTCCTGCTT > 1:1665566/1‑100 CGCCCCTTGCGAGGCGGAACGGGGTTATTGGCTTAACAGACCGTTTTTACGTGCCTGTTCTTCCCACTGCGGGATCACCGTTTTGATGAAGTCCTGCTTC > 2:2142859/1‑100 GCCCCTTGCGAGGCGGAACGGGGTTATTGGCTTAACAGACCGTTTTTACGTGCCTGTTCTTCCCACTGCGGGATCACCGTTTTGATGAAGTCCTGCTTCT > 2:2796364/1‑100 CCCTTGCGAGGCGGAACGGGGTTATTGGCTTAACAGACCGTTTTTACGTGCCTGTTCTTCCCACTGCGGGATCACCGTTTTGATGAAGTCCTGCTTC < 1:2324872/97‑1 GAACAAATCAAGGCCGAGAAGCAGGACTTCATCAAAACGGTGATCCCGCAGTGGGAAGAACAGGCACGTAAAAACGGTCTGTTAAGCCAATAACCCCGTTCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4289108‑4289212‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccgccCCTTGCGAGGCGGAACGGGGTTATTGGCTTAACAGACCGTTTTTACGTGCCTGTTCTTCCCACTGCGGGATCACCGTTTTGATGAAGTCCTGCTTCT < NC_000913/4289220‑4289124 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |