New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3246877 =	90 (0.830)	15 (0.150)	8/164	NT	15.3%	coding (226/777 nt)	exuR	hexuronate regulon transcriptional repressor; autorepressor
	?	NC_000913	3246902 =	83 (0.830)					coding (251/777 nt)	exuR	hexuronate regulon transcriptional repressor; autorepressor

ATTCGGCAATATTACTTTCGATGAGCTGGCGAGCCTGAAGCAACTCAAACGGACCGTAATTGGCGAATTCCATATTATTGTCAGCCGCCTGCTGATGGCGCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3246982‑3246877 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggctgACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAA  >  NC_000913/3246902‑3247000                                                                                                                                                                                                               ATTCGGCAATATTACTTTCGATGAGCTGGCGAGCCTGAAGCAACTCAAACGGACCGTAATTGGCGAATTCCATATTATTGTCAGCCGCCTGCTGATGGCG                                                                                                           <  1:1185411/100‑1    CGGCAATATTACTTTCGATGAGCTGGCGAGCCTGAAGCAACTCAAACGGACCGTAATTGGCGAAGTCCATATTATTGTCAGCCGCCTGCTGATGGCGCG                                                                                                         <  2:367428/99‑1     GGCAATATTACTTTCGATGAGCTGGCGAGCCTGAAGCAACTCAAACGGACCGTAATTGGCGAATTCCATATTATTGTCAGCCGCCTGCTGATGGCGCGGC                                                                                                       <  1:1051182/100‑1      GCAATATTACTTTCGATGAGCTGGCGAGCCTGAAGCAACTCAAACGGACCGTAATTGGCGAATTCCATATTATTGTCAGCCGCCTGCTGATGGCGCGGCT                                                                                                      >  1:1322192/1‑100       CAATATTACTTTCGATGAGCTGGCGAGCCTGAAGCAACTCAAACGGACCGTAATTGGCGAATTCCATATTATTGTCAGCCGCCTGCTGATGGCGCGGCTG                                                                                                     <  1:2365161/100‑1                                 ggCTGAAGCAACTCAAACGGACCGTAATTGGCGAATTCCATATTATTGTCAGCCGCCTGCTGATGGCGCGGCTGACAATAATATGGAATTCGCCAATTAC                                                                           >  1:2880580/3‑100                                                               GCGAATTCCATATTATTGTCAGCCGCCTGCTGATGGCGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAG                                             >  1:1676371/1‑100                                                                     TCCATATTATTGTCAGCCGCCTGCTGATGGCGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATC                                       >  1:442732/1‑100                                                                         TATTATTGTCAGCCGCCTGCTGATGGTGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAA                                   >  1:557691/1‑100                                                                               TGTCAGCCGCCTGCTGATGGCGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATA                             >  1:2496508/1‑100                                                                               TGTCAGCCGCCTGCTGATGGCGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATA                             >  1:461219/1‑100                                                                               TGTCAGCCGCCTGCTGATGGCGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATA                             >  1:1731856/1‑100                                                                                GTCAGCCGCCTGCTGATGGCGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATAT                            >  1:2077220/1‑100                                                                                GTCAGCCGCCTGCTGATGGCGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATAT                            >  2:508250/1‑100                                                                                GTCAGCCGCCTGCTGATGGCGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATAT                            >  1:1806136/1‑100                                                                                GTCAGCCGCCTGCTGATGGCGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATAT                            >  1:744114/1‑100                                                                                GTCAGCCGCCTGCTGATGGCGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATAT                            >  2:1072852/1‑100                                                                                 TCAGCCGCCTGCTGATGGCGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATT                           >  1:2739035/1‑100                                                                                  CAGCCGCCTGCTGATGGCGCGGCTGACAATAATATGGAACTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTG                          >  2:1933169/1‑100                                                                                              GATGGCGCGGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGG              <  2:744112/100‑1                                                                                                      GGCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAG      >  1:958378/1‑100                                                                                                       GCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGG     >  1:75242/1‑100                                                                                                       GCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGG     <  2:456020/100‑1                                                                                                       GCTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGG     <  1:2900042/100‑1                                                                                                        CTGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGT    <  2:3101092/100‑1                                                                                                         TGACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTA   <  1:2429837/100‑1                                                                                                          GACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAA  >  1:979992/1‑100                                                                                                                                                                                                               ATTCGGCAATATTACTTTCGATGAGCTGGCGAGCCTGAAGCAACTCAAACGGACCGTAATTGGCGAATTCCATATTATTGTCAGCCGCCTGCTGATGGCGCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3246982‑3246877 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggctgACAATAATATGGAATTCGCCAATTACGGTCCGTTTGAGTTGCTTCAGGCTCGCCAGCTCATCGAAAGTAATATTGCCGAATTCGCGGCAACTCAGGTAA  >  NC_000913/3246902‑3247000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.