New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4103511 =	NA (NA)	4 (0.040)	4/164	NT	NA	noncoding (5/84 nt)	REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	4103544 =	NA (NA)					noncoding (38/84 nt)	REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences

TATAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGAT‑AGCGTCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4103616‑4103511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGT  >  NC_000913/4103544‑4103641                                                                                                                                                                                                               TATAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGAT‑AGCGTCTTA                                                                                                          >  1:366054/1‑100   TAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGTGACGCTGAT‑AGCGTCTTATC                                                                                                        <  2:1048296/100‑1   TAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGAT‑AGCGTCTTATC                                                                                                        >  1:2428926/1‑100   TAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGAT‑AGCGTCTTATC                                                                                                        >  1:663138/1‑100   TAAGCGGAGTTAAACTTCGAATTTGCAGGCAGGATAAGACGTTTACGCCGCATCCGGCACTTGAGCAGGATGCCTGATGCGACGCTGAT‑AGCGTCTTATC                                                                                                        >  2:2828155/1‑100    AAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGAT‑AGCGTCTTATCA                                                                                                       >  1:2193937/1‑100    AAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGAT‑AGCGTCTTATCA                                                                                                       >  2:309939/1‑100     AGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGAT‑AGCGTCTTATCAG                                                                                                      >  1:2409558/1‑100     AGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGAT‑AGCGTCTTATCAG                                                                                                      >  2:2148196/1‑100     AGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGAT‑AGCGTCTTATC                                                                                                        >  2:330439/1‑98      GCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGAT‑AGCGTCTTATCAGG                                                                                                     <  2:1077669/100‑1           GTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCT‑ATCAGCGTCGCATCAGGCATCC                                                                                                <  1:2473328/100‑1             TAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGAT‑AGCGTCTTATCAGGCATacac                                                                                              >  2:1686799/1‑96                                                                       GATGCCTGATGCGACGCTGAT‑AGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACT                                    >  1:1384232/1‑100                                                                          GCCTGATGCGACGCTGAT‑AGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCG                                 >  1:1216101/1‑100                                                                           CCTGATGCGACGCTGAT‑AGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGC                                >  1:752917/1‑100                                                                           CCTGATGCGACGCTGAT‑AGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGC                                >  1:2613215/1‑100                                                                                                      TCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAG      <  1:174772/100‑1                                                                                                       CAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAG      >  1:377159/1‑99                                                                                                       CAGGCATCCTGCTCAAATGCCGGATGCGGCATACACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGC     >  2:2046191/1‑100                                                                                                         GGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCG   <  1:883600/100‑1                                                                                                          GCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGT  <  2:1455855/100‑1                                                                                                          GCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGT  >  2:477751/1‑100                                                                                                                                                                                                               TATAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGAT‑AGCGTCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4103616‑4103511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGT  >  NC_000913/4103544‑4103641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.