New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4103511 =NA (NA)4 (0.040) 4/164 NT NA noncoding (5/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4103544 = NA (NA)noncoding (38/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 145 total aligned reads displayed.

ATCGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCC  >  NC_000913/4103412‑4103609
                                                                                                   |                                                                                                   
aTCGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAgg                                                                                                     <  1:1993332/100‑1 (MQ=255)
aTCGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAgg                                                                                                     <  1:165500/100‑1 (MQ=255)
 acggctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGc                                                                                                    >  2:477751‑M1/99‑100 (MQ=255)
  cggctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGcc                                                                                                   <  1:883600‑M1/3‑1 (MQ=255)
  cGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGcc                                                                                                   >  2:184326/1‑100 (MQ=255)
   gAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCt                                                                                                  <  1:2050904/100‑1 (MQ=255)
   gAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCt                                                                                                  >  1:1350284/1‑100 (MQ=255)
    gctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtgtatgccgcatccggcatttgagcaggatGCCTg                                                                                                 >  2:2046191‑M1/96‑100 (MQ=255)
    aaaaGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTg                                                                                                 >  1:2310919/1‑100 (MQ=255)
     ctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTg                                                                                                 >  1:377159‑M1/95‑99 (MQ=255)
     aaaGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGa                                                                                                <  2:1409286/100‑1 (MQ=255)
      aaGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGAt                                                                                               <  1:2582751/100‑1 (MQ=255)
        gCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATaa                                                                                             >  1:990348/1‑100 (MQ=255)
         cTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAg                                                                                            >  1:1080932/1‑100 (MQ=255)
          tGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGa                                                                                           <  2:70059/100‑1 (MQ=255)
            gACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACg                                                                                         >  1:427087/1‑100 (MQ=255)
             aCGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGc                                                                                        <  1:226244/100‑1 (MQ=255)
              cgcgGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGc                                                                                        >  2:333815/1‑99 (MQ=255)
              cgcgGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCt                                                                                       >  1:387974/1‑100 (MQ=255)
                 ggACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATc                                                                                   >  1:467852/1‑100 (MQ=255)
                 ggACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATc                                                                                   <  1:237683/100‑1 (MQ=255)
                  gACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCa                                                                                  <  1:1735681/100‑1 (MQ=255)
                    cGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGc                                                                                <  1:818865/100‑1 (MQ=255)
                    cGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGc                                                                                <  1:2070938/100‑1 (MQ=255)
                       tGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTc                                                                             >  1:2715489/1‑100 (MQ=255)
                       tGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTc                                                                             >  2:2914882/1‑100 (MQ=255)
                       tGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTc                                                                             >  1:403696/1‑100 (MQ=255)
                       tGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTc                                                                             >  1:2035214/1‑100 (MQ=255)
                       tGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTc                                                                             <  1:1966903/100‑1 (MQ=255)
                          aaaaGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCa                                                                          <  2:1349936/100‑1 (MQ=255)
                          aaaaGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCa                                                                          >  2:270178/1‑100 (MQ=255)
                               gcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCATCAgg                                                                     >  1:752917‑M1/69‑100 (MQ=255)
                               gcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCATCAgg                                                                     >  1:2613215‑M1/69‑100 (MQ=255)
                               cgcCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAgg                                                                     <  1:1212648/100‑1 (MQ=255)
                                gcCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGc                                                                    <  2:1738256/100‑1 (MQ=255)
                                gcCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGc                                                                    <  2:403694/100‑1 (MQ=255)
                                cggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCATCAGGc                                                                    >  1:1216101‑M1/68‑100 (MQ=255)
                                 ccGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCa                                                                   >  1:181963/1‑100 (MQ=255)
                                   agttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATc                                                                 >  1:1384232‑M1/65‑100 (MQ=255)
                                    aCTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATcc                                                                <  1:395010/100‑1 (MQ=255)
                                       gAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGAAGCTATCAGCGTCGCATCAGGCATCCTGc                                                             >  1:1010596/1‑100 (MQ=255)
                                        aGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGc                                                             <  2:2894235/99‑1 (MQ=255)
                                          cGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCa                                                          <  2:2149821/100‑1 (MQ=255)
                                          cGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCa                                                          >  1:1593504/1‑100 (MQ=255)
                                           ggCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCaa                                                         >  2:883597/1‑100 (MQ=255)
                                              aaGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATg                                                      <  1:1107121/100‑1 (MQ=255)
                                               aGATCGAAGATTTTTCCCGCCGGTTGGGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGc                                                     <  1:270180/100‑1 (MQ=255)
                                                gATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAGGACGCTATCAGCGTCGTATCAGGCATCCTGCTCAAATg                                                      >  2:3099271/1‑98 (MQ=255)
                                                 aTCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCg                                                   <  2:2065719/100‑1 (MQ=255)
                                                  tCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCgg                                                  >  1:2618241/1‑100 (MQ=255)
                                                   cGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGa                                                 >  2:1115283/1‑100 (MQ=255)
                                                   cGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGa                                                 >  2:2613156/1‑100 (MQ=255)
                                                   cGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGa                                                 >  1:1557247/1‑100 (MQ=255)
                                                   cGAAGATTTTTCCCGCCGGTGGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGa                                                 >  2:1905559/1‑100 (MQ=255)
                                                    gAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGAt                                                <  1:2427966/100‑1 (MQ=255)
                                                        aTTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcgg                                            <  1:1378274/100‑1 (MQ=255)
                                                          ttttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcggcg                                          >  2:2445656/1‑100 (MQ=255)
                                                          ttttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcggcg                                          <  1:783280/100‑1 (MQ=255)
                                                          atctCCCGCCGGTTGTGGGGAAAATACCCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcggcg                                          <  1:2635057/97‑1 (MQ=255)
                                                           tttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGt                                         >  2:2193917/1‑100 (MQ=255)
                                                           tttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTAGCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcgg                                            <  2:2361211/97‑1 (MQ=255)
                                                           ttgcccGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcggc                                           <  1:1316146/95‑1 (MQ=255)
                                                              cccGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTaaa                                      >  1:1674542/1‑100 (MQ=255)
                                                                cgccgGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACg                                    >  2:2621821/1‑100 (MQ=255)
                                                                cgccgGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACg                                    <  1:1293704/100‑1 (MQ=255)
                                                                  ccgGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGcc                                  <  1:135412/100‑1 (MQ=255)
                                                                       tgtgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATc                             <  1:159787/100‑1 (MQ=255)
                                                                        gtgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcc                            <  2:2539243/100‑1 (MQ=255)
                                                                        gtgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcc                            <  1:186809/100‑1 (MQ=255)
                                                                         tgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcct                           >  1:2782858/1‑100 (MQ=255)
                                                                          ngggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctg                          >  2:635212/2‑100 (MQ=255)
                                                                           gggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgc                         >  1:2943578/1‑100 (MQ=255)
                                                                            ggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgcc                        <  1:2018729/100‑1 (MQ=255)
                                                                            ggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgcc                        >  2:1734753/1‑100 (MQ=255)
                                                                             gAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgcct                       <  2:511674/100‑1 (MQ=255)
                                                                             gAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgcct                       <  2:1580487/100‑1 (MQ=255)
                                                                             gAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGACGGATGCGGCGTAAACGCCTTATcctgcct                       >  2:1740570/1‑100 (MQ=255)
                                                                              aaaaTAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgcctg                      <  1:184328/100‑1 (MQ=255)
                                                                               aaaTAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGTCGGATGCGGCGTAAACGCCTTATCctgcctgc                     <  1:2948520/100‑1 (MQ=255)
                                                                                aaTAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCa                    <  2:787958/100‑1 (MQ=255)
                                                                                 aTAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCaa                   >  2:575399/1‑100 (MQ=255)
                                                                                  tAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCaaa                  >  2:1662801/1‑100 (MQ=255)
                                                                                    aCCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCagatc                >  2:262992/1‑96 (MQ=255)
                                                                                      ccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATg                <  1:3090085/98‑1 (MQ=255)
                                                                                      ccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCg              <  1:960087/100‑1 (MQ=255)
                                                                                        ccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGaa            <  2:2648925/100‑1 (MQ=255)
                                                                                        ccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGaa            <  1:1711382/100‑1 (MQ=255)
                                                                                        ccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGaa            <  1:1399230/100‑1 (MQ=255)
                                                                                         cGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGaa            <  2:429707/99‑1 (MQ=255)
                                                                                         cGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAg           <  2:2749039/100‑1 (MQ=255)
                                                                                         cGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAg           <  1:2647262/100‑1 (MQ=255)
                                                                                            aGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGttt        <  2:2472849/100‑1 (MQ=255)
                                                                                            aGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGttt        >  2:856933/1‑100 (MQ=255)
                                                                                             gtgtatGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTa       >  2:1686799‑M1/7‑100 (MQ=255)
                                                                                             gtgtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTa       <  1:573095/100‑1 (MQ=255)
                                                                                               gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc     >  1:3088231/1‑100 (MQ=255)
                                                                                               gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc     <  2:1770294/100‑1 (MQ=255)
                                                                                               ggatGCCTGATGCGACGCTGATAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc     <  1:2473328‑M1/96‑1 (MQ=255)
                                                                                                 aGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTc   >  1:1569582/1‑100 (MQ=255)
                                                                                                  ggCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTcc  >  1:2514084/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
ATCGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCC  >  NC_000913/4103412‑4103609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.