| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1011918 = | NA (NA) | 4 (0.040) | 5/162 | NT | NA | intergenic (+47/‑83) | uup/pqiA | replication regulatory ABC‑F family DNA‑binding ATPase/paraquat‑inducible, SoxRS‑regulated inner membrane protein |
| ? | NC_000913 | 1011945 = | NA (NA) | noncoding (27/29 nt) | REP87 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP87 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
CGCGGCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1012024‑1011918‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcaTGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCTCGC > NC_000913/1011945‑1012043 CGCGGCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCA < 2:1416924/100‑1CGCGGCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCA < 1:2840050/100‑1 CGGCATGATGATGTTCGCACATTGGTACTCCTTAATTATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATC < 1:2187865/100‑1 GGCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCA < 1:152797/100‑1 GGCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCA < 1:2800402/100‑1 GGCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCA > 1:2491612/1‑100 GCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCAG < 1:1481062/100‑1 GCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCA < 2:93459/99‑1 TGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGTCTGATAAACCCAGTTCATCAGGCA < 1:2958039/100‑1 TGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCAGGCA > 1:2357903/1‑100 GATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATGAACTGGGTTTATCAGGCAT < 1:1099401/100‑1 ATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATGAACTGGGTTTATCAGGCATG < 1:2223401/100‑1 GCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAAC < 1:2607069/100‑1 GCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAAC < 1:242363/100‑1 TGCCTGATAAACCCAGTTCATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCA > 1:2300879/1‑100 AACCCAGTTCATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAA > 2:214886/1‑100 TCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGT < 1:438092/100‑1 TCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGT > 2:868357/1‑100 CAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACAggatgtg < 1:338122/100‑8 CAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTG > 1:2688171/1‑100 CAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTG < 1:2576656/100‑1 AGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGC > 2:1067298/1‑100 AGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGC < 1:1081119/100‑1 GGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCT > 1:474236/1‑100 GGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCT < 1:214888/100‑1 GGCATGAAAACCAACACTTTGTTAGTCATCCGTAAAATAGCGCATCATTAAGTAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCT < 2:579443/100‑1 CATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCTCG > 2:1035974/1‑100 CATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCTCG > 2:2700022/1‑100 ATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCTCGC > 2:2147240/1‑100 ATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCTCGC < 2:982935/100‑1 CGCGGCATGATGATGTTCGCACATTGGTACTCCTTAATGATGCGCTATTTTACAGATGACTAACAAAGTGTTGGTTTTCATGCCTGATAAACCCAGTTCATCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1012024‑1011918‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcaTGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCTCGC > NC_000913/1011945‑1012043 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |