BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1011918 =	NA (NA)	4 (0.040)	5/162	NT	NA	intergenic (+47/‑83)	uup/pqiA	replication regulatory ABC‑F family DNA‑binding ATPase/paraquat‑inducible, SoxRS‑regulated inner membrane protein
*	?	NC_000913	1011945 =	NA (NA)	4 (0.040)	5/162	NT	NA	noncoding (27/29 nt)	REP87 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP87 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 144 total aligned reads displayed.

TTGAAGCGTTAAAAAATGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCTCGCA  >  NC_000913/1011846‑1012044

 atgatgttcgcacattggtactccttaatgatgcgctattttacagatgactaacaaagtgttggttttcatgcctgatgaactgggtttatcaggcaTg                                                                                                    <  1:2223401‑M2/2‑1 (MQ=255)

  gAAGCGTTAAAAAATGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGa                                                                                                   >  1:1644426/1‑100 (MQ=255)

     gCGTTAAAAAATGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGaaaa                                                                                                >  2:893156/1‑100 (MQ=255)

       gTTAAAAAATGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAAcc                                                                                              >  2:615197/1‑100 (MQ=255)

        ttAAAAAATGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCa                                                                                             <  1:1533932/100‑1 (MQ=255)

        ttAAAAAATGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCa                                                                                             <  1:450333/100‑1 (MQ=255)

         tAAAACATGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCaa                                                                                            >  2:503795/1‑100 (MQ=255)

          gcacattggtactccttaatgatgcgctattttacagatgactaacaaagtgttggttttcatgcctgatgaactgggtttatcaggcaTGAAAACCAac                                                                                           <  1:242363‑M2/11‑1 (MQ=255)

          gcacattggtactccttaatgatgcgctattttacagatgactaacaaagtgttggttttcatgcctgatgaactgggtttatcaggcaTGAAAACCAac                                                                                           <  1:2607069‑M2/11‑1 (MQ=255)

           aaaaaTGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAaca                                                                                          >  1:3072955/1‑100 (MQ=255)

              aaTGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACtt                                                                                       >  2:1111983/1‑100 (MQ=255)

              aaTGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACtt                                                                                       >  1:2888711/1‑100 (MQ=255)

               aTGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACttt                                                                                      >  1:1251507/1‑100 (MQ=255)

                tggtggCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTg                                                                                     <  2:2106947/100‑1 (MQ=255)

                  gtggCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACGCTTTGtt                                                                                   >  2:1943933/1‑100 (MQ=255)

                  gtggCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGtt                                                                                   <  1:3034073/100‑1 (MQ=255)

                  gtggCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGtt                                                                                   <  1:967062/100‑1 (MQ=255)

                   tggCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTa                                                                                  <  2:1227892/100‑1 (MQ=255)

                    ggCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAg                                                                                 <  2:3072926/100‑1 (MQ=255)

                    ggCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAg                                                                                 >  1:1621671/1‑100 (MQ=255)

                    ggCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAg                                                                                 <  2:439266/100‑1 (MQ=255)

                    ggCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAg                                                                                 <  1:2870697/100‑1 (MQ=255)

                        gATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCAt                                                                             >  2:2217355/1‑100 (MQ=255)

                         aTCGCAAAATCGTCGACGTAAACAGAGACAGCTGACAACGGTACAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCAt                                                                             >  2:1826127/1‑99 (MQ=255)

                         aTCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATc                                                                            <  1:7868/100‑1 (MQ=255)

                           cGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTg                                                                          <  1:1024187/100‑1 (MQ=255)

                            gCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGt                                                                         >  2:1790482/1‑100 (MQ=255)

                            gCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGt                                                                         >  1:2858687/1‑100 (MQ=255)

                             cAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTa                                                                        >  1:283346/1‑100 (MQ=255)

                               aaaTAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTaaa                                                                      >  2:1423600/1‑100 (MQ=255)

                               aaaTAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTaaa                                                                      >  1:1259362/1‑100 (MQ=255)

                                  tAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATa                                                                   <  1:1502061/100‑1 (MQ=255)

                                     tCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAgcg                                                                <  2:283344/100‑1 (MQ=255)

                                     tCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAgcg                                                                >  2:860124/1‑100 (MQ=255)

                                       gATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGca                                                              <  2:2888682/100‑1 (MQ=255)

                                           tAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGcatcat                                                          >  2:384135/1‑100 (MQ=255)

                                            aaaCAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCAtt                                                         >  2:1572863/1‑100 (MQ=255)

                                            aaaCAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCAtt                                                         >  2:2194665/1‑100 (MQ=255)

                                            aaaCAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCAtt                                                         <  1:19602/100‑1 (MQ=255)

                                               cAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAg                                                      <  2:2258945/100‑1 (MQ=255)

                                                agagACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAgg                                                     <  1:1014530/100‑1 (MQ=255)

                                                agagACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAgg                                                     <  1:2022164/100‑1 (MQ=255)

                                                agagACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAgg                                                     <  1:1014515/100‑1 (MQ=255)

                                                 gagaCAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATAAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGa                                                    >  2:1081114/1‑100 (MQ=255)

                                                  agaCAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAg                                                   <  1:1789916/100‑1 (MQ=255)

                                                  agaCAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAg                                                   <  1:2881176/100‑1 (MQ=255)

                                                  agaCAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAg                                                   <  2:1508562/100‑1 (MQ=255)

                                                   gaCAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGt                                                  <  1:2814432/100‑1 (MQ=255)

                                                   gaCAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGt                                                  >  1:2368169/1‑100 (MQ=255)

                                                     cAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTAc                                                <  1:1674339/100‑1 (MQ=255)

                                                      aGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTAcc                                               <  2:2306946/100‑1 (MQ=255)

                                                      aGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTAcc                                               <  1:2645607/100‑1 (MQ=255)

                                                       gCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCa                                              <  1:1653426/100‑1 (MQ=255)

                                                        cTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCaa                                             >  2:2078741/1‑100 (MQ=255)

                                                        cTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCaa                                             >  2:1629125/1‑100 (MQ=255)

                                                             gttggttttcaTGCCTGATAAACCCAGTTCATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGc                                        <  1:242363‑M1/89‑1 (MQ=255)

                                                             gttggttttcaTGCCTGATAAACCCAGTTCATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGc                                        <  1:2607069‑M1/89‑1 (MQ=255)

                                                              aCGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCg                                       <  1:633945/100‑1 (MQ=255)

                                                              aCGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCg                                       <  1:2366030/100‑1 (MQ=255)

                                                              aCGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCg                                       <  2:470102/100‑1 (MQ=255)

                                                              aCGGTAAAATAGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAGATAGCGCATCATTAAGGAGTACCAATGTGCg                                       <  2:2049768/100‑1 (MQ=255)

                                                               cGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGa                                      <  1:2133348/100‑1 (MQ=255)

                                                                gttAAAATTGCCTGATGAACTGTGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGaa                                     <  2:3097422/98‑1 (MQ=255)

                                                                ggTAAAATTGCCTGATGAACTGGGTTTATCCGGCATGAAACCCAACACTTTGTTAGTCATCTGTAAAATCGCGCATAATTAAGGAGCACCAATGTGCGac                                     <  2:2596333/100‑2 (MQ=255)

                                                                  tAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAAca                                   >  2:2332092/1‑100 (MQ=255)

                                                                  tAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAAca                                   <  1:1677149/100‑1 (MQ=255)

                                                                  tAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAAca                                   <  1:2229127/100‑1 (MQ=255)

                                                                  ctaaaTTGCCTGATGAACTGGGTTTATCAGGCATGATAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAAca                                   <  1:2184267/98‑1 (MQ=255)

                                                                    aaaTTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAAcatc                                 <  1:1138776/100‑1 (MQ=255)

                                                                    aaaTTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCAGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAAcaag                                 >  2:2184247/1‑98 (MQ=255)

                                                                     aaTTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAAcatca                                >  2:1950050/1‑100 (MQ=255)

                                                                       ttGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAAcatcatc                              <  2:1676279/100‑1 (MQ=255)

                                                                       aTGCCTGATAAACCCAGTTCATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAAcatcatc                              <  1:1099401‑M1/99‑1 (MQ=255)

                                                                        tgcctgataaacccagttcatcaggcaTGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAAcatcatca                             >  1:2300879‑M2/28‑100 (MQ=255)

                                                                        TGCCTGATGAACTGGGTTTATCAGACATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAAcatcatca                             <  1:2958039‑M1/100‑1 (MQ=255)

                                                                           CTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGc                          <  1:1481062‑M1/100‑1 (MQ=255)

                                                                            TGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGcc                         <  1:152797‑M1/100‑1 (MQ=255)

                                                                            TGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGc                          <  2:93459‑M1/99‑1 (MQ=255)

                                                                             GATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATAATTAAGGAGTACCAATGTGCGAACATCATCATGCcg                        <  1:2187865‑M1/100‑1 (MQ=255)

                                                                              attaaCTGGCTTTATCAGGCATGAAAACCAACACGTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCcgc                       <  2:739852/97‑1 (MQ=255)

                                                                               TGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCcgcg                      <  2:1416924‑M1/100‑1 (MQ=255)

                                                                                 aaCTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGaa                    >  2:1733922/1‑100 (MQ=255)

                                                                                  aCTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAg                   >  2:2806717/1‑100 (MQ=255)

                                                                                  aCTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAg                   <  1:1487552/100‑1 (MQ=255)

                                                                                   cTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAg                   <  2:368492/99‑1 (MQ=255)

                                                                                    tGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGca                 <  1:133496/100‑1 (MQ=255)

                                                                                     gggTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGcac                <  1:384018/100‑1 (MQ=255)

                                                                                      ggTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGcaca               >  2:2179359/1‑100 (MQ=255)

                                                                                        tttATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTATAATAGCGTATCATTAAGGAGTACCAATGTGCGAACATCATCGTGCCGCGAAGcaca               <  2:1165093/98‑1 (MQ=255)

                                                                                         ttATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATcc            <  1:567721/100‑1 (MQ=255)

                                                                                             caggcaTGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCcgcgaagcacaggatgtg        <  1:338122‑M2/94‑8 (MQ=255)

                                                                                             caggcaTGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCtgtg        >  1:2688171‑M2/7‑100 (MQ=255)

                                                                                             caggcaTGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCtgtg        <  1:2576656‑M2/94‑1 (MQ=255)

                                                                                              aggcaTGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGc       <  1:1081119‑M2/95‑1 (MQ=255)

                                                                                              aggcaTGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGc       >  2:1067298‑M2/6‑100 (MQ=255)

                                                                                               ggcaTGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCt      >  1:474236‑M2/5‑100 (MQ=255)

                                                                                               ggcaTGAAAACCAACACTTTGTTAGTCATCCGTAAAATAGCGCATCATTAAGTAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCt      <  2:579443‑M2/96‑1 (MQ=255)

                                                                                                 caTGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCTCg    >  2:2700022‑M2/3‑100 (MQ=255)

                                                                                                  aTGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCTCGc   >  2:2147240‑M2/2‑100 (MQ=255)

                                                                                                   tGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCTCGCa  >  1:660053/1‑100 (MQ=255)

TTGAAGCGTTAAAAAATGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAATGTGCGAACATCATCATGCCGCGAAGCACATCCTGTGCTCGCA  >  NC_000913/1011846‑1012044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.