New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1939099 =	NA (NA)	8 (0.080)	8/162	NT	NA	noncoding (1/30 nt)	REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	1939129 =	NA (NA)					intergenic (+38/+93)	pykA/lpxM	pyruvate kinase II/myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase

GAGAGGCCTTCGCCTGATGATAAGTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGTGGCGTTTTCGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1939205‑1939099 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catccggcCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATT  >  NC_000913/1939129‑1939226                                                                                                                                                                                                               GAGAGGCCTTCGCCTGATGATAAGTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGTGGTGTTTTCGCCGC                                                                                                           >  2:1161105/1‑100   GAGGCCTTCGCCTGATGATAAGTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGTGGCGTTTTCGCCGCAT                                                                                                         >  1:1948634/1‑100     GGCCTTCGCCTGATGATAAGTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGTGGCGTTTTCGCCGCATCC                                                                                                       <  2:101953/100‑1      GCCTTCGCCTGATGATAAGTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGTGGCGTTTTCGCCGCATCCG                                                                                                      <  1:757912/100‑1        CTTCGCCTGATGATAAGTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGTGGCGTTTTCGCCGCATCCGGC                                                                                                    <  1:306901/100‑1         TTCGCCTGATGATAAGTTCATGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGTGGCGTTTTCGCCGCATCCGG                                                                                                     <  2:3104669/98‑1               TGATGATAAGTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGT                                                                                             <  1:245286/100‑1                                      CAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTC                                                                      <  1:253503/100‑1                                                          GAACTATCATTGAACTGTAGGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTT                                                  <  1:2452906/100‑1                                                                               CCGGATGTGGCGTTTTCGCCGCATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGG                             >  2:2913161/1‑100                                                                                 GGATGTGGCGTTTTCGCCGCATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCC                           >  2:1374866/1‑100                                                                                  GATGTGGCGTTTTCGCCGCATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCT                          >  2:2851553/1‑100                                                                                           TTTTCGCCGCATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCG                 >  1:2115158/1‑100                                                                                            TTTCGCCGCATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGA                <  2:2115141/100‑1                                                                                                      TCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTT      >  2:226405/1‑100                                                                                                       CCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTT     <  2:2871377/100‑1                                                                                                       CCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTT      <  2:651247/99‑1                                                                                                        CGGCCTACAGTTCAATGATAGTTCAACAGATTTCGATTATTCTGAAACAAACTTGAACTTATCATCAGGCGAAAGACTCTCATCGCGAGAGGATTTTTTA    >  1:1422469/1‑100                                                                                                        CGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTA    >  1:2012897/1‑100                                                                                                         GGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTAT   <  1:798873/100‑1                                                                                                         GGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTAT   <  2:390462/100‑1                                                                                                          GCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATT  <  1:762553/100‑1                                                                                                          GCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATT  <  1:61020/100‑1                                                                                                          GCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATT  >  1:2697266/1‑100                                                                                                          GCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATT  <  1:2117235/100‑1                                                                                                          GCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATT  <  1:1428706/100‑1                                                                                                                                                                                                               GAGAGGCCTTCGCCTGATGATAAGTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGTGGCGTTTTCGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1939205‑1939099 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catccggcCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATT  >  NC_000913/1939129‑1939226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.