| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2443819 = | NA (NA) | 6 (0.060) | 5/164 | NT | NA | noncoding (31/80 nt) | REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3082836 | NA (NA) | noncoding (147/147 nt) | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
CTGTTTCAGCAGGCGTCACAGCAGTAAGTTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGgtcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2443917‑2443819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGTAACAAATGTGC < NC_000913/3082836‑3082731 CTGTTTCAGCAGGCGTCACAGCAGTAAGTTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGG < 1:1126711/100‑1CTGTTTCAGCAGGCGTCACAGCAGTAAGTTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGG < 2:1497630/100‑1 TGTTTCAGCAGGCGTCACAGCAGTAAGTTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGGT < 2:2637578/100‑1 GTTTCAGCAGGCGTCACAGCAGTAAGTTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGGTC > 1:1162871/1‑100 TTCAGCAGGCGTCACAGCAGTAAGTTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGGTCGG < 2:2351129/100‑1 TCAGCAGGCGTCACAGCAGTAAGTTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGGTCGGA > 2:402006/1‑100 CAGCAGGCGTCACAGCAGTAAGTTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGGTCGGAT < 2:2839436/100‑1 CAGCAGGCGTCACAGCAGTAAGTTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGGTCGGAT < 1:1440568/100‑1 CAGCAGGCGTCACAGCAGTAAGTTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGGTCGGAT < 2:2539473/100‑1 CAGCAGGCGTCACAGCAGTAAGTTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACATAGGTCGGAT > 2:1301947/1‑100 AGTTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGGTCGGATGCGGCGTGAACGCCTTATCC < 1:2168183/100‑1 AGTTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGGTCGGATGCGGCGTGAACGCCTTATCC < 2:1179894/100‑1 TTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGGTCGGATGCGGCGTGAACGCCTTATCCGA < 1:1915596/100‑1 TGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGGTCGGATGCGGCGTGAACGCCTTATCCGAC < 1:2445336/100‑1 GCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGGTCGGATGCGGCGTGAACGCCTTATCCGACC < 2:1650823/100‑1 CGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGGCCGGATGCGGCGTGAACGCCTTATCCGACCT < 2:2140258/100‑1 gcgcattgcCGGATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAG < 1:848240/91‑1 gatctGGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGG < 2:1684239/95‑1 GGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGagatc > 1:1684253/1‑95 GTCGGATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGTAACAA > 1:193246/1‑100 GTCGGATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGTAACAA > 1:1784861/1‑100 TCGGATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGTAACAAA > 2:2406233/1‑100 CGGATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGTAACAAAT < 2:2444229/100‑1 CGGATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGTAACAAAT > 1:361363/1‑100 CGGATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGTAACAAAT > 1:2953654/1‑100 CGGATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGTAACAAAT > 1:2147792/1‑100 GGATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAACATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGTAACAAA > 2:2493442/1‑98 GATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATGGCATCCGGCAATGCGCATAAGGTAACAAATG > 2:2117502/1‑99 ATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGTAACAAATGTG < 2:1322312/100‑1 ATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGACCGGATAAGATGCGCCAACATCGCATCCGGCAATGCGCACAAGGTAACAAATG > 1:956922/1‑98 TGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGTAACAAATGTac > 2:1881421/1‑98 TGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGTAACAAATGTGC < 2:119407/100‑1 TGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGTAACAAATGTGC < 1:1357049/100‑1 CTGTTTCAGCAGGCGTCACAGCAGTAAGTTGCGGCGTCTGGAGCAGCATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGTCACACGTAGgtcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2443917‑2443819‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATGCGGCGTGAACGCCTTATCCGACCTACGTTCGGCACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCAATGCGCACAAGGTAACAAATGTGC < NC_000913/3082836‑3082731 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |