New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2443819 =NA (NA)6 (0.060) 5/164 NT NA noncoding (31/80 nt) REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3082836 NA (NA)noncoding (147/147 nt) REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences

Only 100 of 151 total aligned reads displayed.

CGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAG  >  NC_000913/2443720‑2443917
                                                                                                   |                                                                                                  
tggTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGAcc                                                                                                    <  1:127942/99‑1 (MQ=255)
gatctccttgtgcgcattgccggatgcgatgctggcgcatcttatccggcctacgggtgccgaacgtaggtcggataaggcgttcacgccgcatccgacc                                                                                                    >  1:1684253‑M1/100‑100 (MQ=255)
cttccgatcttGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGGTTGCCGGATGCGGCGTGAACGCCTTATCCGAcc                                                                                                    <  1:1344494/90‑1 (MQ=38)
 tgTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCt                                                                                                   >  2:1095990/2‑100 (MQ=255)
 ggTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGAcca                                                                                                   >  2:127940/1‑99 (MQ=255)
 ggTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCt                                                                                                   <  2:913249/100‑1 (MQ=255)
 ggTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCt                                                                                                   >  2:1817978/1‑100 (MQ=255)
  gTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTa                                                                                                  >  1:68207/1‑100 (MQ=255)
     ccttgtgcgcattgccggatgcgatgctggcgcatcttatccggcctacgggtgccgaacgtaggtcggataaggcgttcacgccgcatccgaccagatc                                                                                               <  2:1684239‑M1/6‑6 (MQ=255)
      tGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACgtg                                                                                              <  1:1966463/100‑1 (MQ=255)
      tGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACgtg                                                                                              <  1:1834815/100‑1 (MQ=255)
          tGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGAc                                                                                          <  1:533595/100‑1 (MQ=255)
            cGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCGCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACgt                                                                                        >  2:1728576/1‑100 (MQ=255)
             ggAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACgtg                                                                                       >  1:1883846/1‑100 (MQ=255)
             ggAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACgtg                                                                                       >  1:1416334/1‑100 (MQ=255)
               aaaTTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTa                                                                                     >  1:601043/1‑100 (MQ=255)
                aaTTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAg                                                                                    <  1:3090754/100‑1 (MQ=255)
                 aTTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGg                                                                                   <  1:666943‑M1/100‑2 (MQ=255)
                 aTTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGg                                                                                   >  1:2965861‑M1/1‑99 (MQ=255)
                  ttgttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgc                                                                                  >  2:113087‑M1/1‑98 (MQ=255)
                   tgttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcc                                                                                 <  1:1696366‑M1/100‑4 (MQ=255)
                    gttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTTCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcct                                                                                <  1:2900411‑M1/100‑5 (MQ=255)
                    gttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcct                                                                                >  1:2681836‑M1/1‑96 (MQ=255)
                     ttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctg                                                                               >  2:2262613‑M1/1‑95 (MQ=255)
                       gAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctgat                                                                             >  2:1966016‑M1/1‑93 (MQ=255)
                        aaGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATa                                                                            >  2:1418340/1‑100 (MQ=255)
                        aaGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATa                                                                            <  2:1171025/100‑1 (MQ=255)
                         aGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATaa                                                                           <  1:604084/100‑1 (MQ=255)
                          gggTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAg                                                                          >  1:1284711/1‑100 (MQ=255)
                            gTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGAc                                                                        >  2:1280924/1‑100 (MQ=255)
                                  cGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATa                                                                  >  1:1668137/1‑100 (MQ=255)
                                  cGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCGGATAAGACGCGATa                                                                  <  1:326275/100‑1 (MQ=255)
                                   gtttAAGGCGGGGTAATCTGCCCGCTCAGTGTTTGCCAGATGCGGCGTGAACGCTTTATCCGACCTACGTGTGACGTGTATGCCTGATAAGACGCGAt                                                                   <  2:2443458/96‑1 (MQ=37)
                                   ggTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATaa                                                                 >  2:2760390/1‑100 (MQ=255)
                                    gTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAg                                                                >  1:1521185/1‑100 (MQ=255)
                                     ttAAGGCGGGGTAATCTGCTCTCGTAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTATGCCTGATAAGACGCGATAAg                                                                <  2:2915382/99‑1 (MQ=255)
                                      tAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCg                                                              <  1:867548/100‑1 (MQ=255)
                                         ggCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCg                                                           >  1:2646791/1‑100 (MQ=255)
                                          gCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGc                                                          <  1:2166879/100‑1 (MQ=255)
                                          gCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGc                                                          <  2:2858966/100‑1 (MQ=255)
                                           cGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCA                                                         >  2:50818‑M2/1‑100 (MQ=255)
                                              ggTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctgatgcgacgcttatcgcgtcttatca                                                      <  1:1794094‑M1/100‑31 (MQ=255)
                                              ggTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCA                                                      >  1:2262633‑M2/1‑100 (MQ=255)
                                               gTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAG                                                     >  1:749388‑M2/1‑100 (MQ=255)
                                                tAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctgatgcgacgcttatcgcgtcttatcagg                                                    <  2:2847223‑M1/100‑33 (MQ=255)
                                                  aTCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctgatgcgacgcttatcgcgtcttatcaggcc                                                  <  1:314713‑M1/100‑35 (MQ=255)
                                                   tCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctgatgcgacgcttatcgcgtcttatcaggcct                                                 <  1:2739918‑M1/100‑36 (MQ=255)
                                                    cTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtg                                                >  1:635554/1‑100 (MQ=255)
                                                     tGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgc                                               <  2:2971942/100‑1 (MQ=255)
                                                        tctcGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGgcctgatgcgacgcttatcgcgtcttatcaggcctacac                                             <  1:50506‑M1/99‑40 (MQ=255)
                                                          tcGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATTAGGCAtgctgcac                                          <  1:2112905/100‑3 (MQ=255)
                                                           cGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCTGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTcc                                         <  1:2188979/100‑1 (MQ=255)
                                                           cGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTcc                                         >  1:2157021/1‑100 (MQ=255)
                                                           cGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTcc                                         <  2:421525/100‑1 (MQ=255)
                                                           cGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTcc                                         >  1:2745288/1‑100 (MQ=255)
                                                           cGCAGGGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCGACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAt                                                 <  2:1027818/92‑1 (MQ=255)
                                                            gCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAAACGCGATAAGCGTCGCATCAGGCATGCTGCTCCa                                        >  2:131629/1‑100 (MQ=255)
                                                                  tttGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCTATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgcc                                  <  2:1309337/100‑1 (MQ=255)
                                                                  tttGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgcc                                  <  1:3026956/100‑1 (MQ=255)
                                                                   ttGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccg                                 <  2:2125560/100‑1 (MQ=255)
                                                                   aggtcggataaggcgttcacgccgcatccggcCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccg                                 <  2:2140258‑M1/68‑1 (MQ=255)
                                                                    tGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccgc                                >  2:155883/1‑100 (MQ=255)
                                                                    tGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccgc                                >  2:77726/1‑100 (MQ=255)
                                                                    tGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccgc                                <  1:319528/100‑1 (MQ=255)
                                                                    ggtcggataaggcgttcacgccgcatccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccgc                                <  2:1650823‑M1/69‑1 (MQ=255)
                                                                     gtcggataaggcgttcacgccgcatccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCa                               <  1:2445336‑M1/70‑1 (MQ=255)
                                                                      tcggataaggcgttcacgccgcatccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCaa                              <  1:1915596‑M1/71‑1 (MQ=255)
                                                                      ccGGATGCGGCGTGGACGCCTTATCCGACCTACGTGTCACGTGTGGGCCTGATAAGACGCGATAAGCTTCGCATCAGGCATGCTGCTCCAGACGCCGCa                               <  2:1157210/99‑1 (MQ=37)
                                                                      ccGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCaa                              <  2:635553/100‑1 (MQ=255)
                                                                       cGGATGCGTCGTGACCGCCTTCGCCGCCCGACGCGTGACGTGTAGGCCTCATAACACGCGAGAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCa                               <  2:2863018/98‑1 (MQ=25)
                                                                       cGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAAc                             >  1:732763/1‑100 (MQ=255)
                                                                       cGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAAc                             >  1:1819396/1‑100 (MQ=255)
                                                                        ggataaggcgttcacgccgcatccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACt                            <  1:2168183‑M1/73‑1 (MQ=255)
                                                                         gATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACtt                           <  1:2805362/100‑1 (MQ=255)
                                                                          aTGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTa                          <  2:314091/100‑1 (MQ=255)
                                                                          aTGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTa                          <  2:1532496/100‑1 (MQ=255)
                                                                             cggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActg                       <  1:390634/100‑1 (MQ=255)
                                                                             cggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCAACAGGCATGCTGCTCCAGACGCCGCAACCTActg                       >  2:238462/1‑100 (MQ=255)
                                                                              ggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActgc                      >  2:2938288/1‑100 (MQ=255)
                                                                              ggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActgc                      >  1:2801244/1‑100 (MQ=255)
                                                                              ggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActg                       <  2:2307009/99‑1 (MQ=255)
                                                                                cgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActgctg                    <  1:1587656/100‑1 (MQ=255)
                                                                                cgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActgctg                    <  2:1430875/100‑1 (MQ=255)
                                                                                 gTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCtgt                   <  2:1384069/100‑1 (MQ=255)
                                                                                      cGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCctacacgtcacacgtaggtcggataaggcgttcacgc              <  1:2926867‑M2/100‑38 (MQ=255)
                                                                                      cGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTACAGACGCCGCAACTTACTGCTGTGACGc              >  2:1998607/1‑100 (MQ=255)
                                                                                       gCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGcc             >  2:83793/1‑100 (MQ=255)
                                                                                        ccTTATCGGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCct            >  1:1634995/1‑100 (MQ=255)
                                                                                         cTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCctg           >  1:2467760/1‑100 (MQ=255)
                                                                                         cTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATACTGCTCCAGACGCCGCAACTTACTCCTGTGACGcc             >  2:1354311/1‑98 (MQ=255)
                                                                                          ttATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCctgc          >  1:2921064/1‑100 (MQ=255)
                                                                                          ttATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCctgc          <  1:1895966/100‑1 (MQ=255)
                                                                                            atccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCctgctg        <  2:2839436‑M1/93‑1 (MQ=255)
                                                                                            atccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCctgctg        <  1:1440568‑M1/93‑1 (MQ=255)
                                                                                             tccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGa       >  2:402006‑M1/7‑100 (MQ=255)
                                                                                              ccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGaa      <  2:2351129‑M1/95‑1 (MQ=255)
                                                                                                gcccTACGTGTGACGTGTAGGCCGGATAAGCCGCAATAAGCGCCGCATCATGCATGCTGCGCCACACGCCGCAACTTACTGCTGTGATGTctgc          <  2:2463323/92‑1 (MQ=255)
                                                                                                gacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAAc    >  1:1162871‑M1/4‑100 (MQ=255)
                                                                                                 acCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACa   <  2:2637578‑M1/98‑1 (MQ=255)
                                                                                                  cCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAg  <  1:1126711‑M1/99‑1 (MQ=255)
                                                                                                   |                                                                                                  
CGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAG  >  NC_000913/2443720‑2443917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.