New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3546221NA (NA)7 (0.070) 6/166 NT NA intergenic (+22/‑338) nfuA/gntT Fe/S biogenesis protein, putative scaffold/chaperone protein/gluconate transporter, high‑affinity GNT I system
?NC_000913 = 3546253 NA (NA)noncoding (32/36 nt) REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 154 total aligned reads displayed.

GCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT  >  NC_000913/3546154‑3546352
                                                                                                   |                                                                                                   
gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGC                                                                                                     <  1:2035752‑M2/100‑1 (MQ=255)
    gATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTAc                                                                                                 <  2:805645/100‑1 (MQ=255)
       ctcACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGtt                                                                                              >  2:1424736/1‑100 (MQ=255)
         cACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCCTTTCGGGCCTACGTTGa                                                                                            >  2:742018/1‑100 (MQ=255)
         cACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGa                                                                                            >  2:1319434/1‑100 (MQ=255)
           ccGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAAc                                                                                          <  1:2294676/100‑1 (MQ=255)
               acacCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACAtgt                                                                                      <  1:2088684/100‑1 (MQ=255)
                cacCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACAtgtg                                                                                     >  2:2137440/1‑100 (MQ=255)
                cacCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACAtgtg                                                                                     <  1:3006387/100‑1 (MQ=255)
                  ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGcc                                                                                   >  2:415561/1‑100 (MQ=255)
                  ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGcc                                                                                   >  2:2876171/1‑100 (MQ=255)
                  ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGcc                                                                                   <  1:2335087/100‑1 (MQ=255)
                  ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGc                                                                                    >  2:815377/1‑99 (MQ=255)
                   cAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCa                                                                                  <  1:188164/100‑1 (MQ=255)
                    aGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAg                                                                                 <  2:1036105/100‑1 (MQ=255)
                     gcgcGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGa                                                                                >  1:1188417/1‑100 (MQ=255)
                      cgcgGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGAc                                                                               >  2:2894511/1‑100 (MQ=255)
                        cggcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACg                                                                              >  2:1937781/1‑99 (MQ=255)
                        cggcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGt                                                                             >  2:1221090/1‑100 (MQ=255)
                           cgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTgg                                                                          <  2:2149485/100‑1 (MQ=255)
                             aaCACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGgcg                                                                        <  2:603354/100‑1 (MQ=255)
                             aaCACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGgcg                                                                        <  1:2369679/100‑1 (MQ=255)
                              acacTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGgcgc                                                                       >  2:2247756/1‑100 (MQ=255)
                                 cTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgcagc                                                                    <  1:361002/100‑1 (MQ=255)
                                 cTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgcagc                                                                    >  1:346716/1‑100 (MQ=255)
                                  tCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgcagca                                                                   >  2:2735520/1‑100 (MQ=255)
                                   cgatctactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCAt                                                                  <  2:1257805/96‑1 (MQ=255)
                                       ctactaAGTTATCCCCTCTTTTGTAGATTGCACGATGTAACGCTAAGGAGTCGTTGCTGGGCTACGTTAAACATGCGGCAgc                                                                                >  2:1016270/1‑81 (MQ=255)
                                         actaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCAtagatcg                                                            >  1:1257814/1‑94 (MQ=255)
                                         actaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCttt                                                            >  1:1013210/1‑100 (MQ=255)
                                         actaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCttt                                                            >  2:3012410/1‑100 (MQ=255)
                                         actaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCttt                                                            >  2:2928493/1‑100 (MQ=255)
                                          ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                                                           <  2:2947212/100‑1 (MQ=255)
                                          ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                                                           <  2:3077363/100‑1 (MQ=255)
                                            aaGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTc                                                         >  1:2945214/1‑100 (MQ=255)
                                              gTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCaa                                                       <  2:2171356/100‑1 (MQ=255)
                                                  tCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATcc                                                   >  1:2364445/1‑100 (MQ=255)
                                                   ccccTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCt                                                  >  2:1935510/1‑100 (MQ=255)
                                                    cccTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTc                                                 <  1:1762519/100‑1 (MQ=255)
                                                    cccTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTc                                                 >  2:1709381/1‑100 (MQ=255)
                                                     ccTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCg                                                >  1:2540127/1‑100 (MQ=255)
                                                     ccTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCg                                                >  1:126089/1‑100 (MQ=255)
                                                     ccTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCg                                                >  2:3016444/1‑100 (MQ=255)
                                                      ctctTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCgg                                               >  2:1731734/1‑100 (MQ=255)
                                                      ctctTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCgg                                               >  1:810462/1‑100 (MQ=255)
                                                        ctTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGtt                                             <  1:2616780/100‑1 (MQ=255)
                                                           ttGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGt                                          >  1:1315554/1‑100 (MQ=255)
                                                            tGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCaatctacaaaagaggggatcacttagtagtaggagtgttcgccgcgctggtgttcggtga                                         <  2:2022875‑M2/100‑61 (MQ=255)
                                                              tAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATGGCTTTGTCAAATCCTCGGTTCGTTTc                                       <  1:379270/100‑1 (MQ=255)
                                                              naGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTc                                       >  2:1609627/2‑100 (MQ=255)
                                                               aGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTcc                                      >  2:505706/1‑100 (MQ=255)
                                                               aGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTcc                                      >  1:2603609/1‑100 (MQ=255)
                                                               aGATTGCCCGATGCGACGCTAAAGCGTCAATTCGGGCaatctagaaaagaggggataacgtagtagtaggagtatgcgccgcgatggtgttcagtgagat                                      <  2:2062086‑M2/100‑64 (MQ=255)
                                                                gATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTccc                                     <  2:1677871/100‑1 (MQ=255)
                                                                gATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTccc                                     >  1:1559403/1‑100 (MQ=255)
                                                                gATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTccc                                     >  1:2029903/1‑100 (MQ=255)
                                                                gATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTccc                                     >  1:1485800/1‑100 (MQ=255)
                                                                   tGCCCGATGCGACGCTAAAGCGTCATTTCGGGCaatctacaaaagaggggataacttagtagtaggagtgttcgccgcgctggtgttcggtgagatcgcg                                  <  2:95508‑M2/100‑68 (MQ=255)
                                                                   tGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCcgc                                  <  2:2364423/100‑1 (MQ=255)
                                                                    gCCCGATGCGACGCTAAAGCGTCATTTCGGGCaatctacaaaagaggggataacttagtagtaggagtgttcgccccgctggagttaggagagatccc                                   <  1:2906256‑M2/98‑67 (MQ=255)
                                                                    gCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCcgcg                                 <  1:1731749/100‑1 (MQ=255)
                                                                     cccGATGCGACGCTAAAGCGTCATTTCGGGCaatctacaaaagaggggataacttagtagtaggagtgttcgccgcgctggtgttcggtgagatcgcgca                                <  1:51844‑M2/100‑70 (MQ=255)
                                                                     cccGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGa                                >  1:652416/1‑100 (MQ=255)
                                                                      ccGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGat                               <  1:1988379/100‑1 (MQ=255)
                                                                        gATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGataa                             <  1:2090497/100‑1 (MQ=255)
                                                                         aTGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGataat                            <  1:439089/100‑1 (MQ=255)
                                                                          tGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGataata                           <  2:1984179/100‑1 (MQ=255)
                                                                          tGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGataata                           <  1:1319443/100‑1 (MQ=255)
                                                                           gCGACGCTAAAGCGTCATTTCGGGCCTATGTTGAACATGTGCCAGGCGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGataata                           <  2:2937982/99‑1 (MQ=255)
                                                                           gCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAatat                          >  1:1075527/1‑100 (MQ=255)
                                                                            cGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATg                         <  2:2603584/100‑1 (MQ=255)
                                                                             gACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGa                        >  1:1144400/1‑100 (MQ=255)
                                                                              aCGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGAc                       >  1:11291/1‑100 (MQ=255)
                                                                              aCGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGAc                       <  1:2209345/100‑1 (MQ=255)
                                                                               cGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGAcc                      <  2:388428/100‑1 (MQ=255)
                                                                               cGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGAcc                      >  1:932158/1‑100 (MQ=255)
                                                                               cGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGAcc                      >  1:2991258/1‑100 (MQ=255)
                                                                               cGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGAcc                      >  1:2733067/1‑100 (MQ=255)
                                                                               cGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGAcc                      >  2:2979861/1‑100 (MQ=255)
                                                                                  tAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAAc                   <  1:800665/100‑1 (MQ=255)
                                                                                   aaaGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAAcc                  <  1:625360/100‑1 (MQ=255)
                                                                                   aaaGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAAcc                  >  1:1202580/1‑100 (MQ=255)
                                                                                       cGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCtctc              <  2:2264462/100‑1 (MQ=255)
                                                                                        gTCATTTCGGTCCTACGTTGAACATGTGCCCGACGTTGGCGCAGCCTTGCTTTGTCAAATCCTCGGTTCGTCGCCCCGCGATAATATGACCAACCTCTCa             <  2:1500478/100‑1 (MQ=255)
                                                                                        gTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCa             >  1:1582584/1‑100 (MQ=255)
                                                                                         tCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCAt            <  1:2768164/100‑1 (MQ=255)
                                                                                          cATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATa           <  1:1221098/100‑1 (MQ=255)
                                                                                          cATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATa           >  1:965273/1‑100 (MQ=255)
                                                                                             ttCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATaatt        <  2:2617631/100‑1 (MQ=255)
                                                                                               cGGGCaatctacaaaagaggggataacttagtagtaggagtgttcgccgcgctggtgttcggtgagatcgcgcacacctttcagctccgggaattcgttc      >  2:732590‑M2/1‑5 (MQ=255)
                                                                                               cGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATaattta      >  2:983568/1‑100 (MQ=255)
                                                                                                gggCaatgtggaaaagaggggataacttagtagtaggagtgttcgccgcgctggtgttcggtgagatctcgcacacctttcagctccgggaattcgtaca     >  2:195209‑M2/1‑4 (MQ=255)
                                                                                                gggCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATaatttaa     >  2:2608031/1‑100 (MQ=255)
                                                                                                gggCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAAGCCTCGGTTCGTTTCCCCGCCATACTATGACCAACCTCTCATaattta      >  2:859366/1‑99 (MQ=255)
                                                                                                 ggCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATaatttaa     >  2:101790/1‑99 (MQ=255)
                                                                                                  gCaatctacaaaagaggggataacttagtagtaggagtgttcgccgcgctggtgttcggtgagatcgcgcacacctttcagctccgggaattcgttcagc   >  2:1647280‑M2/1‑2 (MQ=255)
                                                                                                  gCaatctacaaaagaggggataacttagtagtaggagtgttcgccgcgctggtgttcggtgagatcgcgcacacctttcagctccgggaattcgttcagc   <  1:1161131‑M2/100‑99 (MQ=255)
                                                                                                  gCaatctacaaaagaggggataacttagtagtaggagtgttcgccgcgctggggttcggtgagatcgcgcacacctttcagctccgggaattcgttcag    >  2:181766‑M2/1‑2 (MQ=255)
                                                                                                  gCCTACGTTCAACATATGCCAGACGTCGTACCAGCATCGCATTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCCTaatttaa     <  2:2180493/98‑1 (MQ=255)
                                                                                                   ccTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATaatttaaatt  >  1:2226671/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
GCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT  >  NC_000913/3546154‑3546352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.