BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4627892	77 (0.710)	4 (0.040)	4/164	NT	4.7%	coding (578/1233 nt)	nadR	trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor
*	?	NC_000913	= 4627903	91 (0.910)	4 (0.040)	4/164	NT	4.7%	coding (589/1233 nt)	nadR	trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor
Rejected: Frequency below cutoff threshold.

Only 100 of 115 total aligned reads displayed.

TTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGAAGCCGTTT  >  NC_000913/4627804‑4628001

tttATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTgg                                                                                                    <  1:1971359/100‑1 (MQ=255)

tttATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTgg                                                                                                    <  1:1471193/100‑1 (MQ=255)

tttATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTgg                                                                                                    <  1:1471207/100‑1 (MQ=255)

     gtctgAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGtcgat                                                                                               >  1:1813099‑M2/3‑95 (MQ=255)

     ggCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGtcgat                                                                                               >  2:365929‑M2/1‑95 (MQ=255)

     ggCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGtcgat                                                                                               <  2:2797829‑M2/100‑6 (MQ=255)

      gCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGtcgatc                                                                                              <  1:240877‑M2/100‑7 (MQ=255)

      gCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGtcgatc                                                                                              <  1:936904‑M2/100‑7 (MQ=255)

       cTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGtcgatcc                                                                                             >  2:1493262‑M2/1‑93 (MQ=255)

       cTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGtcgat                                                                                               >  2:2728892‑M2/1‑93 (MQ=255)

           aaaaGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGaaa                                                                                         >  2:2089630/1‑100 (MQ=255)

             aaGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACg                                                                                       >  2:111958/1‑100 (MQ=255)

               gggATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTa                                                                                     >  2:943436/1‑100 (MQ=255)

                  ntCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCt                                                                                  >  2:807063/2‑100 (MQ=255)

                     cAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGCGACGGTGCTGGTCGATCCGAAACGAACCtt                                                                                 >  1:572702/1‑98 (MQ=255)

                     cAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTa                                                                               <  2:1571655/100‑1 (MQ=255)

                       gCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATg                                                                             <  1:1566137/100‑1 (MQ=255)

                       gCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATg                                                                             >  1:374476/1‑100 (MQ=255)

                       gCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATg                                                                             <  1:2584457/100‑1 (MQ=255)

                         cGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAg                                                                           <  2:2582763/100‑1 (MQ=255)

                         cGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAg                                                                           <  1:1478088/100‑1 (MQ=255)

                              ctgatctACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGCTCCGAAACGTACCTTTATGAGTATc                                                                       >  2:1576331/1‑99 (MQ=255)

                               tgatctACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAg                                                                     >  2:2716542/1‑100 (MQ=255)

                               tgatctACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAg                                                                     >  1:230781/1‑100 (MQ=255)

                               tgatctACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAg                                                                     <  1:2505511/100‑1 (MQ=255)

                               tgatctACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGAGATGGTAGATCCGAAACGTACCTTTATGAGTAtaa                                                                      >  2:576264/1‑97 (MQ=255)

                                gatctACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGc                                                                    >  1:1457317/1‑100 (MQ=255)

                                  tctACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCgg                                                                  >  2:2272982/1‑100 (MQ=255)

                                     acacCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTgc                                                               <  2:1666795/100‑1 (MQ=255)

                                        ccTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCa                                                            >  1:2479130/1‑100 (MQ=255)

                                        ccTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCa                                                            >  1:2167849/1‑100 (MQ=255)

                                        ccTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCa                                                            >  1:3101052/1‑100 (MQ=255)

                                        ccTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCa                                                            <  2:788685/100‑1 (MQ=255)

                                        ccTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCa                                                            >  2:1604332/1‑100 (MQ=255)

                                        ccTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCa                                                            <  1:1941849/100‑1 (MQ=255)

                                        ccTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCa                                                            <  2:2303363/100‑1 (MQ=255)

                                          tCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGa                                                          >  2:2962999/1‑100 (MQ=255)

                                            ggAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGAGCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGGGGTGCGCAGATc                                                        >  2:320356/1‑100 (MQ=255)

                                                gaagCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGGGCGCAGATCcgcg                                                    >  2:471398/1‑100 (MQ=255)

                                                  agCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGaa                                                  >  2:1701483/1‑100 (MQ=255)

                                                   gCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGaaa                                                 >  1:231325/1‑100 (MQ=255)

                                                     cGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAAc                                               <  1:420426/100‑1 (MQ=255)

                                                          cgcCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGtt                                          >  1:2386809/1‑100 (MQ=255)

                                                           gcCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTc                                         <  1:2480431/100‑1 (MQ=255)

                                                            ccACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTcc                                        >  1:196596/1‑100 (MQ=255)

                                                            ccACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTcc                                        <  2:2974217/100‑1 (MQ=255)

                                                            ccACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTcc                                        >  1:1220048/1‑100 (MQ=255)

                                                             cacaGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCg                                       <  2:866651/100‑1 (MQ=255)

                                                               gatcttatGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCt                                     <  2:920630/95‑1 (MQ=255)

                                                                 gTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTAc                                   >  1:2683358/1‑100 (MQ=255)

                                                                   atatGGAACATCTGGGGATCGAGACGGTGCTGGtcgatccccagatgttccatatactgtggcgcatcggcttcatccgaggtgtagatcagatccggct                                 <  1:1950291‑M2/100‑68 (MQ=255)

                                                                   atatGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTg                                 >  2:2952769/1‑100 (MQ=255)

                                                                    tatGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTagatc                                >  1:920634/1‑96 (MQ=255)

                                                                     atGGCACATCTGGGGATCGAGTCGGTGCCGGTCTATCCGACACGTACCTTTCTGAGTATCAGCGGTGCGCAGATCCGCCCAAACCCGTTCCGCTACTg                                 >  2:3053718/1‑98 (MQ=255)

                                                                     atGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTggg                               >  2:2820192/1‑100 (MQ=255)

                                                                     atGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTggg                               <  1:111960/100‑1 (MQ=255)

                                                                      tGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGa                              >  2:2884519/1‑100 (MQ=255)

                                                                      tGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGa                              <  1:2842593/100‑1 (MQ=255)

                                                                      tGGAACAGCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGa                              <  1:717923/100‑1 (MQ=255)

                                                                        gAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAat                            <  1:1966267/100‑1 (MQ=255)

                                                                        gAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAat                            >  2:365444/1‑100 (MQ=255)

                                                                        gAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAat                            <  1:2749061/100‑1 (MQ=255)

                                                                             tCTGGGGATCGAGACGGTGCTGGtcgatccccagatgttccatatactgtggcgcatcggcttcttccgaggtgtagatcagatccggctggatcccttt                       <  1:504068‑M2/100‑78 (MQ=255)

                                                                             tCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATAtt                       >  1:2534970/1‑100 (MQ=255)

                                                                               tGGGGATCGAGACGGTGCTGGtcgatccccagatgttccatatactgtggcgcatcggcttcttccgaggtgtagatcagatccggctggctcccttttt                     <  1:1951356‑M2/100‑80 (MQ=255)

                                                                               tGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTcc                     <  1:2618023/100‑1 (MQ=255)

                                                                               tGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTcc                     <  2:239009/100‑1 (MQ=255)

                                                                               tGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTcc                     <  1:1046025/100‑1 (MQ=255)

                                                                                ggggATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCt                    >  1:879678/1‑100 (MQ=255)

                                                                                ggggATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCt                    >  1:933748/1‑100 (MQ=255)

                                                                                  ggATCGAGACGGTGCTGGtcgatccccagatgttccatatactgtggcgcatcggcttcttccgaggtgtagatcagatccggctggatccctttttcag                  <  2:1981713‑M2/100‑83 (MQ=255)

                                                                                  ggATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTAc                  <  1:1707489/100‑1 (MQ=255)

                                                                                   gATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTAcc                 >  1:1105535/1‑100 (MQ=255)

                                                                                    aTCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCg                >  1:1519699/1‑100 (MQ=255)

                                                                                    aTCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCg                >  1:1552542/1‑100 (MQ=255)

                                                                                    aTCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCg                <  1:2329487/100‑1 (MQ=255)

                                                                                    aTCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCg                >  1:37014/1‑100 (MQ=255)

                                                                                       gagaCGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAg             <  2:805011/100‑1 (MQ=255)

                                                                                       gagaCGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAg             >  1:259991/1‑100 (MQ=255)

                                                                                       gagaCGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAg             >  2:2171265/1‑100 (MQ=255)

                                                                                       gagaCGGTACTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAg             <  2:1103825/100‑1 (MQ=255)

                                                                                        agaCGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGt            >  2:294599/1‑100 (MQ=255)

                                                                                         gccGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGAGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTg           >  1:2100588/3‑100 (MQ=255)

                                                                                         gaCGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTg           >  1:3001925/1‑100 (MQ=255)

                                                                                         gaCGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGACCCGCGAAACCCCGTTCCGCTACTGGGAATATATTCCTGCCGAAGTg           >  2:1337342/1‑100 (MQ=255)

                                                                                           cGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGaa         >  1:728462/1‑100 (MQ=255)

                                                                                           cGGTGCTGGTCGATCCGAAAAATACCTTTATGAGTATCAGCGGTGCGCAGAACCGAGAAAACACGTTCCGATACTGGGAATATAATCCTAACGAAGTaaa         >  2:1352083/1‑100 (MQ=255)

                                                                                            ggTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAACCCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGAAg        <  1:294601/100‑1 (MQ=255)

                                                                                            ggTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGaa         <  2:2091434/99‑1 (MQ=255)

                                                                                            ggTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGAAg        <  2:2759270/100‑1 (MQ=255)

                                                                                             gTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGAAGc       <  2:3049417/100‑1 (MQ=255)

                                                                                             gTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGAAGc       <  1:2073670/100‑1 (MQ=255)

                                                                                             gTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGAAGc       <  2:2306137/100‑1 (MQ=255)

                                                                                              tGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGAAGcc      <  2:640674/100‑1 (MQ=255)

                                                                                               gCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGTAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGAAGCCg     >  2:107425/1‑100 (MQ=255)

                                                                                                cTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGAAGCCGt    >  1:834214/1‑100 (MQ=255)

                                                                                                 tGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGAAGCCGtt   >  1:2156943/1‑100 (MQ=255)

                                                                                                  ggTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGAAGCCGttt  >  2:55308/1‑100 (MQ=255)

                                                                                                  ggTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGAAGCCGttt  >  1:1910925/1‑100 (MQ=255)

                                                                                                   gTCGATCCGAAACGTAACTTTATGAGTATCAGCGGTGCGCACATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGAAGCCg     >  2:1852319/1‑96 (MQ=255)

TTTATGGCTGAAAAAGGGATCCAGCCGGATCTGATCTACACCTCGGAAGAAGCCGATGCGCCACAGTATATGGAACATCTGGGGATCGAGACGGTGCTGGTCGATCCGAAACGTACCTTTATGAGTATCAGCGGTGCGCAGATCCGCGAAAACCCGTTCCGCTACTGGGAATATATTCCTACCGAAGTGAAGCCGTTT  >  NC_000913/4627804‑4628001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.