| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4240156 | NA (NA) | 10 (0.080) | 6/164 | NT | NA | intergenic (‑101/‑169) | yjbT/psiE | putative periplasmic protein/phosphate starvation inducible protein |
| ? | NC_000913 | = 4240189 | NA (NA) | noncoding (33/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4240058‑4240156‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCAAGACAAACCGCACCAAAGCCGGTAATTCAAAAATCACCCATTCAGGTGATTCCCAGCCACCAGCAATGCGCG < NC_000913/4240189‑4240084 GTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTG < 1:3458730/100‑1 TCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCC > 2:2267510/1‑100 TCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCC > 2:1921751/1‑100 CCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCG < 2:1951361/100‑1 CCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCG < 1:521426/100‑1 CCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCG < 2:1190564/100‑1 CCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTCGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGCTGCGGTTTGTCTTGCC > 2:1744717/1‑99 CAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGG > 2:2308111/1‑100 CAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGG < 2:1982966/100‑1 CAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGG > 1:2658874/1‑100 CAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGG > 1:3441198/1‑100 CAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGG > 1:764236/1‑100 GAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGAn < 1:1319509/100‑2 CGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGAT‑‑‑‑‑GCGCCTGGCGGCGCATCCGG < 2:2557703/100‑1 TGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCA < 2:1181805/100‑1 TGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCA < 1:1793444/100‑1 GCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCAA < 2:861229/100‑1 CTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCAAG < 2:1919805/100‑1 TGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCAAGA < 1:792453/100‑1 GGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCAAGAC < 1:3605823/100‑1 GGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCAAGAC < 2:417991/100‑1 GGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCAAGAC < 2:3428563/100‑1 GGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCAAGAC < 1:852304/100‑1 GCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCAAGACAAACCGCACCAAAGCCGGTAATTCAAAAATCACCCATTCAGGTGATTCCCAGCCACCAGCAA > 2:1301427/1‑100 CCGGATAAGCCGCGCCTGGCGGCGCATCCGGCAAGACAAACCGCACCAAAGCCGGTAATTCAAAAATCACCCATTCAGGTGATTCCCAGCCACCAGCAAT > 2:3487182/1‑100 CGGATAAGCCGCGCCTGGCGGCGCATCCGGCAAGACAAACCGCACCAAAGCCGGTAATTCAAAAATCACCCATTCAGGTGATTCCCAGCCACCAGCAATG > 2:1382427/1‑100 CGGATAAGCCGCGCCTGGCGGCGCATCCGGCAAGACAAACCGCACCAAAGCCGGTAATTCAAAAATCACCCATTCAGGTGATTCCCAGCCACCAGCAATG < 2:1213381/100‑1 GGATAAGCCGCGCCTGGCGGCGCATCCGGCAAGACAAACCGCACCAAAGCCGGTAATTCAAAAATCACCCATTCAGGTGATTCCCAGCCACCAGCAATGC > 1:3632278/1‑100 GATAAGCCGCGCCTGGCGGCGCATCCGGAAAGACAAACCGCACCAAAGCCGGGAATTCAAAAATGACCCATTCAGGTGATTCCCAGCCACCAGCAATG < 1:1915044/98‑1 ATAAGCCGCGCCTGGCGGCGCATCCGGCAAGACAAACCGCACCAAAGCCGGTAATTCAAAAATCACCCGTTCAGGTGATTCCCAGCCACCAGCAATGCGC > 1:1289623/1‑100 ATAAGCCGCGCCTGGCGGCGCATCCGGCAAGACAAACCGCACCAAAGCCGGTAATTCAAAAATCACCCATTCAGGTGATTCCCAGCCACCAGCAATGCGC > 2:3593491/1‑100 ATAAGCCGCGCCTGGCGGCGCATCCGGCAAGACAAACCGCACCAAAGCCGGTAATTCAAAAATCACCCATTCAGGTGATTCCCAGCCACCAGCAATGCGC < 1:972838/100‑1 TAAGCCGCGCCTGGCGGCGCATCCGGCAAGACAAACCGCACCAAAGCCGGTAATTCAAAAATCACCCATTCAGGTGATTCCCAGCCACCAGCAATGCGCG < 1:613127/100‑1 GTTCCAGAGGAACATTGTCGATTTTTCGCGCATTGCTGGTGGCTGGGAATCACCTGAATGGGTGATTTTTGAATTACCGGCTTTGGTGCGGTTTGTCTTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4240058‑4240156‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCAAGACAAACCGCACCAAAGCCGGTAATTCAAAAATCACCCATTCAGGTGATTCCCAGCCACCAGCAATGCGCG < NC_000913/4240189‑4240084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |