New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4325806 =NA (NA)28 (0.230) 7/164 NT NA noncoding (5/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 4325838 = NA (NA)noncoding (37/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences

TCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4325911‑4325806
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  >  NC_000913/4325838‑4325936
                                                                                                                                                                                                             
TCAGGGCTACAATGGCCCGCGCCCTCCGTACGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTA                                                                                                           <  2:1014902/100‑1
 CAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTAT                                                                                                          >  1:1891168/1‑100
 CAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTAT                                                                                                          >  2:741875/1‑100
 CAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTAT                                                                                                          >  2:306312/1‑100
  AGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTATC                                                                                                         >  1:800488/1‑100
  AGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTATC                                                                                                         >  1:1358551/1‑100
   GGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTTCCGACTGCCTGATGCGACGCTCGCGCGTCTTATCA                                                                                                        >  2:1020277/1‑100
   GGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTATCA                                                                                                        <  1:1221995/100‑1
   GGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTATCA                                                                                                        <  2:2975084/100‑1
   GGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATGCGACGCTCGCGCGTCTTATCA                                                                                                        >  1:160251/1‑100
   GGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATGCGACGCTCGCGCGTCTTATCA                                                                                                        >  1:3180885/1‑100
   GGCATACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCGTATC                                                                                                         >  1:302596/1‑99
    GCCTACCACTTCCCCCACCCGCCGCAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTATC                                                                                                         <  1:2946172/98‑1
     cgaactAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTATCAG                                                                                                       <  1:1188388/93‑1
     CCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTATCAGG                                                                                                      <  2:3131051/100‑1
     CCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTATCAGG                                                                                                      <  2:918639/100‑1
     CCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACACTCGCGCGTCTTATCAGG                                                                                                      >  1:2993018/1‑100
      CTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTATCAGGC                                                                                                     >  1:3446463/1‑100
        ACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGC                                                                                                     <  2:3309821/98‑1
                                                               CAGTGCCAACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCG                                            >  2:567643/1‑100
                                                                  TGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGG                                          >  1:3180582/1‑99
                                                                     CGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATT                                      >  2:319642/1‑100
                                                                      GACTGCCTGATGCGACGCTCGCGCGTCTTATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTT                                     >  2:2765944/1‑100
                                                                      GACTGCCTGATGCGACGCTCGCGCGTCTTATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTT                                     >  1:267159/1‑100
                                                                       tCTGCCCGATGCGACGCTTGCGCGTCTTATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTG                                    <  1:967445/99‑1
                                                                       ACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCAGTTGGCACTGTTGCCGGAGGCGGCGTCAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTG                                    >  1:1520033/1‑100
                                                                       ACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTG                                    >  2:3172021/1‑100
                                                                       ACTGCCTGATGCGACGCTCGCGCGTCTTATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTG                                    >  2:3654270/1‑100
                                                                        CTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGT                                   >  2:1254338/1‑100
                                                                        CTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGT                                   >  2:784569/1‑100
                                                                        CTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGT                                   >  1:992638/1‑100
                                                                        CTGCCTGATGCGACGCTCGCGCGTCTGATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGT                                   >  2:2258489/1‑100
                                                                        CTGCCCGATGCGACGCTTGCGCGTCTTATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGa                                   >  2:967451/1‑99
                                                                         TGCCTGATGCGACGCTTGCGCGTCTTATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGCGGGAATTTGTA                                  >  2:2417913/1‑100
                                                                         TGCCTGATGCGACGCTCGCGCGTCTTATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTA                                  >  1:1643769/1‑100
                                                                          GCCTGATGCGACGCTTGCGCGTCTTATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGT                                   >  1:3563834/1‑98
                                                                          GCCTGATGCGACGCTCGCGCGTCTTATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAG                                 >  2:1194147/1‑100
                                                                          GCCTGATGCGACGCTCGCGCGTCTTATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAG                                 >  2:3498760/1‑100
                                                                          GCCTGATGCGACGCTCGCGCGTCTTATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAG                                 >  1:3111107/1‑100
                                                                          GCCTGATGCGACGCTCGCGCGTCTTATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGGGCGGGAATTAGTA                                  >  1:2258589/1‑99
                                                                           CCTGATGCGACGCTCGCGCGTCTTATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGG                                >  2:1308608/1‑100
                                                                           CCTGATGCGACGCTCGCGCGTCTTATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGG                                >  2:3361407/1‑100
                                                                            CTGATGCGACGCTTGCGCGTCTTATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGC                               >  2:1316979/1‑100
                                                                             TGATGCGACGCTTGCGCGTCTTATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCC                              >  1:1232423/1‑100
                                                                             TGATGCGACGCTTGCGCGTCTTATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGCGTGCGGGAATTTGTAGGC                               >  1:2935344/1‑99
                                                                              GATGCGACGCTTGCGCGTCTTATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCT                             >  2:69768/1‑100
                                                                              GATGCGACGCTCGCGCGTCTTATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCT                             >  1:3490432/1‑100
                                                                                                   ATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGagat        >  1:1158319/1‑96
                                                                                                   ATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGC        <  2:2406544/100‑1
                                                                                                    TCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCA       <  2:2470447/100‑1
                                                                                                     CAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCAT      <  2:3669234/100‑1
                                                                                                      AGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGGGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATC     >  1:180968/1‑100
                                                                                                       GGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCAn      <  1:1027601/98‑2
                                                                                                       GGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTCCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA    <  2:2503664/100‑1
                                                                                                        GCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGGATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   >  1:2737902/1‑100
                                                                                                        GCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:2176879/100‑1
                                                                                                        GCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:2955774/100‑1
                                                                                                        GCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   >  2:1543550/1‑100
                                                                                                        GCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGACGCATCA    >  1:2579047/1‑99
                                                                                                        GCAGTAGGCACTGTTGCCGGATGCGGCGTAACCGCCTTATCCGGCCTACCGAGGGTGCGCGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  1:258765/100‑1
                                                                                                         CAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  2:3398292/100‑1
                                                                                                         CAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  2:3698068/100‑1
                                                                                                         CAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  1:2740992/100‑1
                                                                                                         CAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  <  2:2096587/100‑1
                                                                                                         CAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG   <  2:2431658/99‑1
                                                                                                                                                                                                             
TCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4325911‑4325806
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGG  >  NC_000913/4325838‑4325936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.