New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4325806 =NA (NA)28 (0.230) 7/164 NT NA noncoding (5/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913 4325838 = NA (NA)noncoding (37/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences

Only 100 of 259 total aligned reads displayed.

TTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAG  >  NC_000913/4325707‑4325905
                                                                                                   |                                                                                                   
cctgatgcgacgcttgcgcgtcttatcaggcctacaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccgactg                                                                                                     <  2:2096587‑M1/1‑1 (MQ=255)
cctgatgcgacgcttgcgcgtcttatcaggcctacaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccgactg                                                                                                     <  2:3698068‑M1/1‑1 (MQ=255)
cctgatgcgacgcttgcgcgtcttatcaggcctacaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccgactg                                                                                                     <  1:2740992‑M1/1‑1 (MQ=255)
 tACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAggcggc                                                                                                    >  1:1943833/1‑100 (MQ=255)
 ctgatgcgacgcttgcgcgtcttatcaggcctacaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccgactg                                                                                                     <  2:2431658‑M1/1‑1 (MQ=255)
 ctgatgcgacgcttgcgcgtcttatcaggcctacaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccgactGc                                                                                                    >  2:1543550‑M1/99‑100 (MQ=255)
 ctgatgcgacgcttgcgcgtcttatcaggcctacaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccgactGc                                                                                                    <  1:2955774‑M1/2‑1 (MQ=255)
 ctgatgcgacgcttgcgcgtcttatcaggcctacaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccgactGc                                                                                                    <  1:2176879‑M1/2‑1 (MQ=255)
  tgatgcgacgcttgcgcgtcttatcaggcctacaaattcccggaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccgactGcc                                                                                                   <  2:2503664‑M1/3‑1 (MQ=255)
   ccGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCt                                                                                                  <  1:3545446/100‑1 (MQ=255)
     tgcgacgcttgcgcgtcttatcaggcctacaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccgactGCCTGa                                                                                                <  2:2470447‑M1/6‑1 (MQ=255)
     ggCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTg                                                                                                 <  2:2410570/99‑1 (MQ=255)
     ggCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGa                                                                                                >  1:1270579/1‑100 (MQ=255)
     ggCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTAAAGTGTAGTTCGAAATTTATACAGATGAGAggcgg                                                                                                     >  1:1020271/1‑95 (MQ=255)
       cAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATa                                                                                              <  1:181476/100‑1 (MQ=255)
        aaaaGAGAGGTAGGGAGTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATaa                                                                                             <  1:2566532/100‑1 (MQ=255)
        aaaaGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATaa                                                                                             <  2:2875765/100‑1 (MQ=255)
         aaaGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAg                                                                                            <  2:379568/100‑1 (MQ=255)
          aaGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGa                                                                                           <  2:1245559/100‑1 (MQ=255)
           agagagGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGAc                                                                                          >  1:1161053/1‑100 (MQ=255)
                ggTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGAcgcgcg                                                                                     <  1:2814280/100‑1 (MQ=255)
                  tAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAg                                                                                   <  2:2907669/100‑1 (MQ=255)
                  tAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAg                                                                                   <  1:3092921/100‑1 (MQ=255)
                  tAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAg                                                                                   >  2:3271289/1‑100 (MQ=255)
                    gggACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCg                                                                                 >  1:1536313/1‑100 (MQ=255)
                      gACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTTGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTc                                                                               >  1:647865/1‑100 (MQ=255)
                        cTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGgcgc                                                                             >  1:1895842/1‑100 (MQ=255)
                         tgaaCGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCa                                                                            <  2:3626707/98‑1 (MQ=255)
                          tAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCAt                                                                           >  1:529824/1‑100 (MQ=255)
                            ggcctacaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaatggtgccgactGCCTGATAAGACGCGCAAGCGTCGCATCa                                                                         >  1:1232423‑M1/72‑100 (MQ=255)
                            aCGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCa                                                                         >  2:68607/1‑100 (MQ=255)
                              cctacaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccgactGCCTGATAAGACGCGCGAGCGTCGCATCAgg                                                                       >  2:1308608‑M1/70‑100 (MQ=255)
                              cctacaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccgactGCCTGATAAGACGCGCGAGCGTCGCATCAgg                                                                       >  2:3361407‑M1/70‑100 (MQ=255)
                               gCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCTCGCGCGTCTTATCAGGc                                                                      <  2:1915746/100‑1 (MQ=255)
                               gCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGc                                                                      >  1:3067430/1‑100 (MQ=255)
                               ctacaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccgactGCCTGATAAGACGCGCGAGCGTCGCATCAGGc                                                                      >  2:1194147‑M1/69‑100 (MQ=255)
                                tacaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccgactGCCTGATAAGACGCGCGAGCGTCGCATCAGGCa                                                                     >  1:1643769‑M1/68‑100 (MQ=255)
                                cATGATGGTGACCTCAGTTAAGAGACGCCAGTTAAGAGTAGTTCGAAATTTATACAAAAGCGAGCCGGCCTGGCAAGACTAGCGACCGACGCATCACGCa                                                                     >  1:3517970/1‑100 (MQ=255)
                                cATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCa                                                                     >  1:3698039/1‑100 (MQ=255)
                                cATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCa                                                                     >  1:37447/1‑100 (MQ=255)
                                 atgatgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAg                                                                    >  1:1305458/1‑100 (MQ=255)
                                 acaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaatggtgccgactGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAg                                                                    >  1:992638‑M1/67‑100 (MQ=255)
                                   gatgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTc                                                                  >  2:3173517/1‑100 (MQ=255)
                                   aaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccgactGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTc                                                                  >  1:267159‑M1/65‑100 (MQ=255)
                                    atgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCg                                                                 <  2:854386/100‑1 (MQ=255)
                                    atgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCg                                                                 >  1:3244541/1‑100 (MQ=255)
                                    aattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCg                                                                 >  2:319642‑M1/64‑100 (MQ=255)
                                        tGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCAc                                                             <  2:3048820/100‑1 (MQ=255)
                                         gACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACt                                                            <  1:1593409/100‑1 (MQ=255)
                                         gACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACt                                                            >  2:358591/1‑100 (MQ=255)
                                          cgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacagtgccaactGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTg                                                           >  2:567643‑M1/58‑100 (MQ=255)
                                           ccTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGt                                                          >  1:3583163/1‑100 (MQ=255)
                                           ccTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGt                                                          >  2:2218616/1‑100 (MQ=255)
                                            cTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGtt                                                         >  2:152453/1‑100 (MQ=255)
                                               aGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGcc                                                      >  2:1674148/1‑100 (MQ=255)
                                               aGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGcc                                                      >  2:2744432/1‑100 (MQ=255)
                                               aGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGcc                                                      <  2:1558488/100‑1 (MQ=255)
                                               aGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGcc                                                      <  1:2750881/100‑1 (MQ=255)
                                                gTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCg                                                     >  1:2330848/1‑100 (MQ=255)
                                                gTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCg                                                     >  1:2907311/1‑100 (MQ=255)
                                                gTTAAGAGAAGCCAGTTAAGAGTAGTTCGAAAGTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCTTCGCATCAGGCAGTCTGCACTTTTGcc                                                      >  1:2153306/1‑99 (MQ=37)
                                                 ttAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCgg                                                    <  2:3525611/100‑1 (MQ=255)
                                                    agagAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATg                                                 >  2:1945434/1‑100 (MQ=255)
                                                     gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgc                                                >  1:930840/1‑100 (MQ=255)
                                                     gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgc                                                >  1:2098751/1‑100 (MQ=255)
                                                      agaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcg                                               >  2:3170089/1‑100 (MQ=255)
                                                       gaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcgg                                              >  2:742360/1‑100 (MQ=255)
                                                        aaGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcggc                                             <  2:3317128/100‑1 (MQ=255)
                                                         aGCCAGTTAACTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcggcn                                            <  1:1707526/100‑2 (MQ=255)
                                                          gCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATgcggcg                                            <  2:3147057/99‑1 (MQ=255)
                                                           ccAGTTAAGTGTAGTTCGAAATGTATACAGATGGGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcggc                                             <  1:143981/97‑1 (MQ=255)
                                                            cAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTaa                                         >  1:488895/1‑100 (MQ=255)
                                                                tAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGc                                     >  2:3302604/1‑100 (MQ=255)
                                                                tAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGc                                     >  2:3501034/1‑100 (MQ=255)
                                                                 aaGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGcc                                    <  1:3303780/100‑1 (MQ=255)
                                                                     gtAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCTCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCtt                                  >  1:1789069/1‑98 (MQ=255)
                                                                     gtAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTAt                                >  2:800493/1‑100 (MQ=255)
                                                                       aGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATcc                              >  2:1785577/1‑100 (MQ=255)
                                                                       aGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATcc                              <  2:930846/100‑1 (MQ=255)
                                                                       aGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATcc                              >  1:2517282/1‑100 (MQ=255)
                                                                        gTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCg                             >  2:2379009/1‑100 (MQ=255)
                                                                        gTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCg                             >  1:2482076/1‑100 (MQ=255)
                                                                        gTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCg                             >  1:239985/1‑100 (MQ=255)
                                                                          tCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc                           >  1:1696829/1‑100 (MQ=255)
                                                                          tCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc                           >  1:2645146/1‑100 (MQ=255)
                                                                           cGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc                           >  1:666200/1‑99 (MQ=255)
                                                                            gAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt                         >  1:1048468/1‑100 (MQ=255)
                                                                                 ttATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGGAAACGCCTTATCCGGCCTACGGa                    >  1:697654/1‑100 (MQ=255)
                                                                                   ataCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCGGGCCTGCGGa                    >  1:875989/1‑98 (MQ=255)
                                                                                    taCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAggg                 <  2:1161059/100‑1 (MQ=255)
                                                                                    taCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAggg                 <  1:3564879/100‑1 (MQ=255)
                                                                                     aCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt                >  2:591341/1‑100 (MQ=255)
                                                                                      cAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGAGGCGGCGTAAACGCCTTATCCGGCCTGCGGAggggg               >  1:3463139/1‑98 (MQ=255)
                                                                                          tGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCggg           <  1:3197372/100‑1 (MQ=255)
                                                                                            agagGCGGCCTGACAAGACGCGCGAGCGTCTCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCggg           <  1:588112/98‑1 (MQ=255)
                                                                                             gagGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAt        >  2:3438554/1‑100 (MQ=255)
                                                                                               ggcggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGa          >  1:807193/1‑96 (MQ=40)
                                                                                               ggcggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAttt      >  2:225990/1‑100 (MQ=255)
                                                                                               ggcggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAttt      >  2:744866/1‑100 (MQ=255)
                                                                                                 cggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt    >  2:143043/1‑100 (MQ=40)
                                                                                                   |                                                                                                   
TTACCGGCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAG  >  NC_000913/4325707‑4325905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.