| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4624213 = | 124 (0.940) | 6 (0.050) | 4/168 | NT | 5.1% | coding (577/645 nt) | ytjB | SMP_2 family putative membrane‑anchored periplasmic protein |
| ? | NC_000913 | 4624245 = | 105 (0.840) | coding (545/645 nt) | ytjB | SMP_2 family putative membrane‑anchored periplasmic protein | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GGATAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4624316‑4624213‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCG > NC_000913/4624245‑4624341 GGATAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTTCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑G > 1:1062633/1‑100GGATAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑G > 2:1777676/1‑100 GATAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GC < 1:1747321/100‑1 GATAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GC < 2:3238408/100‑1 GATAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GC < 2:294857/100‑1 ATAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCTGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GCA < 1:464644/100‑1 ATAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GCA < 2:2129591/100‑1 TAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GCAG > 2:402704/1‑100 TAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GCAG > 2:329364/1‑100 TAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GCAG > 2:1849815/1‑100 TGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAA > 2:2941740/1‑100 GCACGCTGCTACAGGGTAAACGCACCCGCTGGCAGCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAG > 2:973763/1‑100 GCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGG > 1:711694/1‑100 GCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGG > 1:711311/1‑100 GCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGG < 1:2941719/100‑1 CACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGT > 1:3119062/1‑100 gccGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGCCGGAAAATGTTAATGGTGTTATCCACCTGCTGGGCTTCGGTGGCG > 1:1448876/4‑98 GCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGTCGAG > 1:248782/1‑100 GCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAG > 2:1677667/1‑100 GCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAG < 2:3625749/100‑1 CAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGC > 2:872717/1‑100 AGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCG < 2:2149046/100‑1 GGATAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTG‑‑‑GCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4624316‑4624213‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCG > NC_000913/4624245‑4624341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |