New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 937227	NA (NA)	5 (0.040)	4/162	NT	NA	noncoding (4/36 nt)	REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 937259	NA (NA)					noncoding (36/36 nt)	REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences

GAACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/937130‑937227 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGCCGGATGCGACGCTACCGCGCCTTATCCGGCATACGATGCATTAGTTAGTCAAACGGCGGTGGGGCCAGCACTTCACGATTACCGTTGTGCCCCTGTTCGCTGAC  <  NC_000913/937259‑937154                                                                                                                                                                                                              GAACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGC                                                                                                          <  2:627766/100‑1  nACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCC                                                                                                         >  1:1842667/2‑100  AACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCC                                                                                                         >  2:684963/1‑100  AACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCC                                                                                                         <  1:684958/100‑1   ACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCG                                                                                                        <  1:1367263/100‑1     AGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGA                                                                                                      >  1:538013/1‑100      GATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGAT                                                                                                     >  2:920821/1‑100      GATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGAT                                                                                                     >  1:2728410/1‑100                            AGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATGCGACGCTACCGCGCCTTATCC                                                                               <  2:308000/100‑1                               GAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCCCCGCCGTTTGCCTAACTAATGCATCGTATGCCGGATGCGACGCTACCGCGCCTTATCCGGC                                                                            <  1:2080992/100‑1                               GAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATGCGACGCTACCGCGCCTTATCCGGC                                                                            <  2:2871450/100‑1                                   AGGGGGACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATGCGACGCTACCGCGCCTTATCCGGCAT                                                                          <  1:3067933/98‑1                                      GGCACAACGGTAATCGTGAAGTGCGGGCCCCACGGCCGTTTGACTAACTAATTCATCGTATGCCGGATGCGACGCTACCGCGCCTTATCCGGCATACGA                                                                      <  1:2056623/99‑1                                                                                                   GCCGGATGCGACGCTACCGCGCCTTATCCGGCATACGATGCATTAGTTAGTCAAACGGCGGTGGGGCCAGCACTTCACGATTACCGTTGTGCCCCTGTTC        >  1:766534/1‑100                                                                                                    CCGGATGCGACGCTACCGCGCCTTATCCGGCATACGATGCATTAGTTAGTCAAACGGCGGTGGGGCCAGCACTTCACGATTACCGTTGTGCCCCTGTTCG       >  1:1999179/1‑100                                                                                                      GGATGCGACGCTACCGCGCCTTATCCGGCATACGATGCATTAGTTAGTCAAACGGCGGTGGGGCCAGCACTTCACGATTACCGTTGTGCCCCTGTTCGC      <  1:549423/99‑1                                                                                                       GATGCGACGCTACCGCGCCTTATCCGGCATACGATGCATTAGTTAGTCAAACGGCGGTGGGGCCAGCACTTCACGATTACCGTTGTGCCCCTGTTCGCTG    <  1:729656/100‑1                                                                                                       GATGCGACGCTACCGCGCCTTATCCGGCATACGATGCATTAGTTAGTCAAACGGCGGTGGGGCCAGCACTTCACGATTACCGTTGTGCCCCTGTTCGCTG    <  1:198528/100‑1                                                                                                         TGCGACGCTACCGCGCCTTATCCGGCATACGATGCATTAGTTAGTCAAACGGCGGTGGGGCCAGCACTTCACGATTACCGTTGTGCCCCTGTTCGCTGAC  >  1:2439611/1‑100                                                                                                         TGCGACGCTACCGCGCCTTATCCGGCATACGATGCATTAGTTAGTCAAACGGCGGTGGGGCCAGCACTTCACGATTACCGTTGTGCCCCTGTTCGCTGAC  <  2:2576384/100‑1                                                                                                                                                                                                              GAACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/937130‑937227 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGCCGGATGCGACGCTACCGCGCCTTATCCGGCATACGATGCATTAGTTAGTCAAACGGCGGTGGGGCCAGCACTTCACGATTACCGTTGTGCCCCTGTTCGCTGAC  <  NC_000913/937259‑937154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.