New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 937227NA (NA)5 (0.040) 4/162 NT NA noncoding (4/36 nt) REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 937259 NA (NA)noncoding (36/36 nt) REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 155 total aligned reads displayed.

GAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAA  >  NC_000913/937160‑937357
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gAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGC                                                                                                    >  1:766534‑M2/1‑100 (MQ=255)
  aCAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCAc                                                                                                  <  2:1434804/100‑1 (MQ=255)
   cAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAATGCGCGGTAGCGTCGCATACGGCAc                                                                                                  >  1:381980/1‑99 (MQ=255)
       ggCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTAt                                                                                             >  1:3190709/1‑100 (MQ=255)
        gCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATc                                                                                            <  2:3012639/100‑1 (MQ=255)
        gCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATc                                                                                            >  1:1033563/1‑100 (MQ=255)
         cacaACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCa                                                                                           <  2:746466/100‑1 (MQ=255)
         cacaACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCa                                                                                           <  2:2091776/100‑1 (MQ=255)
           caggctaataatcagcttgaggaaagaagaaaatactgaagtttcagttgatagagTGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAAc                                                                                         >  1:2647653‑M1/57‑100 (MQ=255)
           caACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAAc                                                                                         >  1:2458987/1‑100 (MQ=255)
           caACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAAAGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAAc                                                                                         >  2:2849823/1‑100 (MQ=255)
           caACGGTAATCGTGAAGGGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCaag                                                                                         >  1:2396290/1‑99 (MQ=255)
            aaCGGTAATCGTGCAGTGCTGGCCCCACCGCCGTTTGAGTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACt                                                                                        >  1:2287973/1‑100 (MQ=255)
             aCGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTagatcgga                                                                                       >  2:2461029/1‑93 (MQ=255)
              cGGTAATCGTGAAGTGCTGGCATCACTGCCGATTGCCTAACTAATGCATCGTATGCCGGCTAAGGCGTGGTAGCGTCGCATCCGGCACTCTATAAACTg                                                                                       >  1:65611/1‑99 (MQ=255)
                   aTCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAAtt                                                                                 >  2:2585485/1‑100 (MQ=255)
                      gataaGTGCTGGACCCAGCACCGTTTGACTAACTAATGCATCGTATGCCGGATAAGACGCGGTAGCGTCGCAGCCGGCACTCTATCAACTGAAAATTCAg                                                                              <  1:3072230/97‑1 (MQ=255)
                      gTGAAGTGCTGGCCCCGCCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAg                                                                              <  1:2863511/100‑1 (MQ=255)
                      gTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAg                                                                              <  1:104326/100‑1 (MQ=255)
                      gTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAg                                                                              <  2:2459001/100‑1 (MQ=255)
                      gTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAg                                                                              >  1:3313094/1‑100 (MQ=255)
                       tGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGt                                                                             <  1:2939162/100‑1 (MQ=255)
                          aGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTAtt                                                                          >  2:2142631/1‑100 (MQ=255)
                            ttcgggCCGCACGGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTTGCGTCGCATCCGGCACTCTATCAACTGAAAATTCTGTAtttt                                                                        <  1:3658521/96‑1 (MQ=255)
                             gCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTttc                                                                       >  2:209797/1‑100 (MQ=255)
                              cTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGGAGAGTCGCATCCTGCACTCTATGAACTGAAAATTCAGCATTttct                                                                      >  1:1768883/1‑100 (MQ=255)
                                ggCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTttcttn                                                                    <  1:474037/100‑2 (MQ=255)
                                ggCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTttcttc                                                                    <  2:1801459/100‑1 (MQ=255)
                                ggCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTttcttc                                                                    >  1:2540331/1‑100 (MQ=255)
                                ggCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTttcttc                                                                    <  2:729661/100‑1 (MQ=255)
                                 gCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCGCTCTATCAACTGAAAATTCAGTATTTtcttct                                                                   >  1:1919316/1‑100 (MQ=255)
                                 gCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTtcttct                                                                   >  2:2035454/1‑100 (MQ=255)
                                  ccccACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTcttctt                                                                  >  2:1544133/1‑100 (MQ=255)
                                   cccACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTcttctt                                                                  <  1:2990611/99‑1 (MQ=255)
                                     cACCGCCGTTTGACTCACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTcc                                                               <  2:3646195/100‑1 (MQ=255)
                                     cACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTcc                                                               <  2:3492113/100‑1 (MQ=255)
                                     cACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTcc                                                               <  1:2035441/100‑1 (MQ=255)
                                     cACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTcc                                                               <  2:2728426/100‑1 (MQ=255)
                                      aCCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCt                                                              <  1:2843186/100‑1 (MQ=255)
                                      aCCGCCGGTTGACTAACCAGTGCATCTTATGCCGGATAAGGCGCGATAGCATCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTcc                                                               <  1:1296662/99‑1 (MQ=255)
                                       ccgccgTTTGACTTACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTc                                                             <  1:950404/100‑1 (MQ=255)
                                          ccgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAg                                                          <  1:2744666/100‑1 (MQ=255)
                                          ccgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAg                                                          <  1:397785/100‑1 (MQ=255)
                                          ccgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAg                                                          <  2:2339417/100‑1 (MQ=255)
                                           cgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGc                                                         >  2:2804355/1‑100 (MQ=255)
                                           cgTTTGACTAACTAATGAAGAATAAGACAAATAACTCGCGGTAGCGTCGCATCCTCCATTCTAGCAACTGAAAATTCAGTATTTTCTTCTTTCCTCaccc                                                         >  1:94145/1‑97 (MQ=255)
                                           cgTGTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGc                                                         <  1:864782/100‑1 (MQ=255)
                                            gTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCt                                                        <  1:1357821/100‑1 (MQ=255)
                                            gTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCt                                                        <  1:1321035/100‑1 (MQ=255)
                                            gTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCt                                                        >  1:2312012/1‑100 (MQ=255)
                                              ttGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAACATTCAGTCTTTTCTTCTTTCCTCAAGCTGa                                                      >  1:219237/1‑100 (MQ=255)
                                               tGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCGCTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGat                                                     >  2:2611075/1‑100 (MQ=255)
                                                gACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGatt                                                    >  2:1268566/1‑100 (MQ=255)
                                                 actaactaATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGatta                                                   >  1:1445788/1‑100 (MQ=255)
                                                  ctaactaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGattat                                                  >  1:550776/1‑100 (MQ=255)
                                                  ctaactaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTACCTCAAGCTGattat                                                  >  2:3646410/1‑100 (MQ=255)
                                                   taactaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGattatt                                                 <  2:2897302/100‑1 (MQ=255)
                                                   taactaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGattatt                                                 <  2:2287986/100‑1 (MQ=255)
                                                    aactaaTACATCGTATGCCGGATAAGGCGCGGTAGCGGCACATCCGGCACTCTATCGACGGAAAATTCAGTAATATCTTCTTTCCTCAAGCCGattatt                                                 >  1:2364480/1‑99 (MQ=255)
                                                      ctaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGc                                              <  2:159709/100‑1 (MQ=255)
                                                      ctaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGc                                              <  1:1785503/100‑1 (MQ=255)
                                                        aaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCACGCTGATTATTAGCCt                                            >  1:406728/1‑100 (MQ=255)
                                                          tGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTgg                                          <  1:1816493/100‑1 (MQ=255)
                                                              tCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCatacgatgaattagttagtcaaacggccgtggggcccgcacttcacgattaccgttgtgcc                                       <  1:2056623‑M2/99‑62 (MQ=255)
                                                                 tATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATagag                                   <  2:141708/100‑1 (MQ=255)
                                                                 tATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATagag                                   <  1:3547864/100‑1 (MQ=255)
                                                                  aTGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGACTGGAATagaga                                  >  1:3450477/1‑100 (MQ=255)
                                                                   TGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATagagag                                 >  1:1238054‑M1/1‑100 (MQ=255)
                                                                    GCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGt                                <  2:676003‑M1/100‑1 (MQ=255)
                                                                     CCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTa                               >  2:2369424‑M1/1‑100 (MQ=255)
                                                                      CGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTag                              >  2:2850442‑M1/1‑100 (MQ=255)
                                                                       ggATAAGGCGCGGTAGCGTCGCATCCGGCatacgatgcattagttagtcaaacggcggtggggccagcacttcacgattaccgttgtgcccctgttcgct                             <  2:308000‑M2/100‑72 (MQ=255)
                                                                       GGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTaga                             <  1:43874‑M1/100‑1 (MQ=255)
                                                                        GATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTagag                            >  1:1212799‑M1/1‑100 (MQ=255)
                                                                        GATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTagag                            >  1:1213049‑M1/1‑100 (MQ=255)
                                                                         ATAAGGCGGGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAgg                           >  2:214253‑M1/1‑100 (MQ=255)
                                                                           aaGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGa                         <  1:3170396/100‑1 (MQ=255)
                                                                            nggCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGaa                        >  1:1195578/2‑100 (MQ=255)
                                                                            aGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTCGAGGGa                         >  1:33657/1‑99 (MQ=255)
                                                                             ggCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAAc                       >  1:795716/1‑100 (MQ=255)
                                                                             ggCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAAc                       >  1:1865054/1‑100 (MQ=255)
                                                                             ggCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAAc                       >  2:2015048/1‑100 (MQ=255)
                                                                             ggCGCGGGAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAAc                       >  1:1757924/1‑100 (MQ=255)
                                                                                gcgGTAGCGTCGCATCCGGCACTCTATCAGCTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTcc                    <  1:3648690/100‑1 (MQ=255)
                                                                                gcgGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTcc                    >  1:1488349/1‑100 (MQ=255)
                                                                                gcgGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTcc                    <  1:1268560/100‑1 (MQ=255)
                                                                                     aGCGTCTCATCCGGCACTATATTAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGAt                <  1:1837722/99‑1 (MQ=255)
                                                                                       cGTCGCATCCGGCACTCTATCAACTGAATATTCAGTATTTTCTTATTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATc               <  1:2176/98‑1 (MQ=255)
                                                                                       cGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCgg             <  2:1218089/100‑1 (MQ=255)
                                                                                       cGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCgg             <  2:1820734/100‑1 (MQ=255)
                                                                                        gTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCggg            >  1:1051908/1‑100 (MQ=255)
                                                                                         tCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGa           <  2:1885737/100‑1 (MQ=255)
                                                                                          cGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGCTTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAg          >  2:3203162/1‑100 (MQ=255)
                                                                                           gCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGACTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGt         >  1:1869273/1‑100 (MQ=255)
                                                                                             aTCCGGCatacgatgcattagttagtcaaacggcggtggggccagcacttcacgattaccgttgtgcccctgttcgctgacaatcccctgcgcttccatc       >  1:2728410‑M2/1‑7 (MQ=255)
                                                                                             aTCCGGCatacgatgcattagttagtcaaacggcggtggggccagcacttcacgattaccgttgtgcccctgttcgctgacaatcccctgcgcttccatc       >  2:920821‑M2/1‑7 (MQ=255)
                                                                                              tCCGGCatacgatgcattagttagtcaaacggcggtggggccagcacttcacgattaccgttgtgcccctgttcgctgacaatcccctgcgcttccatct      >  1:538013‑M2/1‑6 (MQ=255)
                                                                                                 ggCatacgatgcattagttagtcaaacggcggtggggccagcacttcacgattaccgttgtgcccctgttcgctgacaatcccctgcgcttccatctgtt   <  1:684958‑M2/100‑98 (MQ=255)
                                                                                                 ggCatacgatgcattagttagtcaaacggcggtggggccagcacttcacgattaccgttgtgcccctgttcgctgacaatcccctgcgcttccatctgtn   >  1:1842667‑M2/1‑3 (MQ=255)
                                                                                                  gCatacgatgcattagttagtcaaacggcggtggggccagcacttcacgattaccgttgtgcccctgttcgctgacaatcccctgcgcttccatctgttc  <  2:627766‑M2/100‑99 (MQ=255)
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GAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAA  >  NC_000913/937160‑937357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.