| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2393131 = | NA (NA) | 17 (0.140) | 12/164 | NT | NA | noncoding (1/36 nt) | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2393163 = | NA (NA) | noncoding (33/36 nt) | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TGGTGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2393236‑2393131‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgac‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGC > NC_000913/2393163‑2393261 TGGTGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCA < 1:1022486/100‑1 GGTGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCAT > 1:1861826/1‑100 GGTGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCAT > 1:3184162/1‑100 GGTGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCAT > 1:645875/1‑100 TGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCC < 2:3244152/100‑1 TGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCC < 2:3244137/100‑1 TGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCC < 2:44849/100‑1 GCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCG > 2:1594035/1‑100 TGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC < 1:1267213/100‑1 TGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC < 2:1104336/100‑1 GGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAG > 1:1116580/1‑100 TAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCA > 2:2963777/1‑100 AAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCAT > 2:1492420/1‑100 AGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATCTGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATC > 1:545270/1‑100 AGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATC > 2:3475752/1‑100 AACGTAGGTCGGATAAGCCGCCTTCGCGGTCCACCCGACACTACGTTCTTATCTGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTCCCATC > 1:1722280/1‑98 ACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAAC > 2:220832/1‑100 GTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCA > 1:375547/1‑100 GTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCA > 2:537728/1‑100 CGGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAG > 2:383320/1‑100 CGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGC > 1:3432229/1‑100 GGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACGATCAACAGCGCCAGCA > 1:3327806/1‑100 GGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCA > 2:794947/1‑100 GGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCA > 2:3597787/1‑100 GATAAGCCGCCTTCACGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCAC > 1:453183/1‑100 TAAGCCGCCTTCCCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGTGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCA > 2:2433751/1‑100 GCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACC < 1:1492414/100‑1 TCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATG < 1:3014792/100‑1 C‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACCCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATACTCATGGATGC > 1:704503/1‑100 TGGTGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2393236‑2393131‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgac‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATGC > NC_000913/2393163‑2393261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |