| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2808181 | NA (NA) | 6 (0.050) | 5/170 | NT | NA | noncoding (51/84 nt) | REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 2808207 | NA (NA) | noncoding (77/84 nt) | REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
TTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2808083‑2808181‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCCCGAATAAAAATTACTTCTGCGCTGCCAGCG < NC_000913/2808207‑2808105 TTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCT > 1:3625389/1‑100 CGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGA > 1:2678292/1‑100 CGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGA > 2:2562546/1‑100 CGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGA < 2:869363/100‑1 GATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGAT > 2:1198547/1‑100 TGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCGCCAGCGTCGCATCA < 1:1268518/100‑1 GCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCGCCAGCGTCGCATCAGG < 2:1921201/100‑1 GCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCGCCAGCGTCGCATCAGG < 2:253998/100‑1 GCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAT < 1:3310687/100‑1 CGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATAAGACGCGCCAGCGTCGCATCAGGCATT < 1:651118/100‑1 AGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATAAGACGCGCCAGCGTCGCATCAGGCATTGTG < 1:2969118/100‑1 GATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGCTGCGGCAAAAACGCCTTATCCGCCCGCATAAAAATTACTTCTGCGCTGCCAG > 1:2968142/1‑100 ATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAGCGCCTTATCCGCCCGAATAAAAATTACTTCTGCGCTGCCAGC < 1:2206482/100‑1 TAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCCCGAATAAAAATTACTTCTGCGCTGCCAGCG > 1:73998/1‑100 TAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCCCGAATAAAAATTACTTCTGCGCTGCCAGCG < 2:785757/100‑1 TTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2808083‑2808181‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCCCGAATAAAAATTACTTCTGCGCTGCCAGCG < NC_000913/2808207‑2808105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |