New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2808181NA (NA)6 (0.050) 5/170 NT NA noncoding (51/84 nt) REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2808207 NA (NA)noncoding (77/84 nt) REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 168 total aligned reads displayed.

GTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGA  >  NC_000913/2808082‑2808280
                                                                                                   |                                                                                                   
gTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGcc                                                                                                     >  2:1676131/1‑100 (MQ=255)
gTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGcc                                                                                                     >  1:2142563/1‑100 (MQ=255)
gTTCGATGGCTGAGTGAATGACGCGCTCCCCGCGTACAGTTAATTTTTATTCGTGCGGCTAACGCGTTTTGGCCGTATCCGCCGTTCTGTGCACAATccc                                                                                                     <  1:2197379/100‑1 (MQ=255)
 ttCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCt                                                                                                    >  1:3625389‑M1/1‑99 (MQ=255)
   cGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtga                                                                                                  >  1:2678292‑M1/1‑97 (MQ=255)
   cGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtga                                                                                                  <  2:869363‑M1/100‑4 (MQ=255)
     atgtttGGGTGAATGATGTGCTAGCAGTGCAGAAGTAGTTTTTATTCGGGCGTATAAGACGTTTTTACCGCATCCGCCGTTCTGTGCACAATGCCTGATg                                                                                                <  1:2023421/95‑1 (MQ=255)
      tGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGc                                                                                               >  1:2732321/1‑100 (MQ=255)
       ggCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCg                                                                                              <  1:3509967/100‑1 (MQ=255)
       ggCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCg                                                                                              >  2:1420956/1‑100 (MQ=255)
        gCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCCTCCGCCGTTCTGTGCACAATGCCTGATGCg                                                                                              >  1:3191356/1‑99 (MQ=255)
        gCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGa                                                                                             >  2:2108453/1‑100 (MQ=255)
         cTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGAc                                                                                            >  2:2955207/1‑100 (MQ=255)
           nggTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATGCGGGCGGCGAAGGCGGTTTTGCCGCATCCGCCGGTCTGTGCACAATGCCTGGTGCGAc                                                                                            >  1:867509/2‑98 (MQ=255)
           gggTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGc                                                                                          >  2:1245216/1‑100 (MQ=255)
           gggTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGACTGATGCGAc                                                                                            <  1:3062212/98‑1 (MQ=255)
             gttaaTGAGGCGCTGGCAGCGCAGAAGTAATTTTTGTTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCt                                                                                         <  2:3027943/96‑1 (MQ=255)
              tGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCTGCCGGATAAGTCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCt                                                                                         <  1:2286827/98‑1 (MQ=255)
              tGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTgg                                                                                       >  1:834433/1‑100 (MQ=255)
               gAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGgc                                                                                      <  2:2343703/100‑1 (MQ=255)
                 aTGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGCTAAGGCGTTTTTGCCGACACCGCCCTCCTGTGCACAATGCCTGATGCGACGATGgcgc                                                                                    >  1:2059367/1‑100 (MQ=255)
                 aTGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGgcgc                                                                                    >  2:3314322/1‑100 (MQ=255)
                     ggCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCt                                                                                >  2:560403/1‑100 (MQ=255)
                     ggCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCt                                                                                >  2:1791241/1‑100 (MQ=255)
                       cgcTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTA                                                                              >  1:73998‑M2/1‑100 (MQ=255)
                       cgcTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTA                                                                              <  2:785757‑M2/100‑1 (MQ=255)
                         cTGGCAGCGCAGAAGTAATTTTTATGCGGGCGGATAAGGCGTTTTTGCCGCAGCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATC                                                                            >  1:2968142‑M2/1‑100 (MQ=255)
                          tGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtgatgcgacgcgccagcgtcgcatca                                                                           <  1:1268518‑M1/100‑27 (MQ=255)
                           ggCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCAt                                                                          >  2:1713717/1‑100 (MQ=255)
                            gCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtgatgcgacgcgccagcgtcgcatcagg                                                                         <  2:1921201‑M1/100‑29 (MQ=255)
                            gCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATg                                                                         >  2:164553/1‑100 (MQ=255)
                              aGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGcc                                                                       <  2:1576034/100‑1 (MQ=255)
                               gcgcAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtgataagacgcgccagcgtcgcatcaggcat                                                                      <  1:3310687‑M1/100‑32 (MQ=255)
                               gcgcAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCt                                                                      >  1:3014795/1‑100 (MQ=255)
                                cgcAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtgataagacgcgccagcgtcgcatcaggcatt                                                                     <  1:651118‑M1/100‑33 (MQ=255)
                                 gcAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTAc                                                                    <  2:2806218/100‑1 (MQ=255)
                                   aGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtgataagacgcgccagcgtcgcatcaggcattgtg                                                                  <  1:2969118‑M1/100‑36 (MQ=255)
                                    gAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACaaa                                                                 >  1:903003/1‑100 (MQ=255)
                                      aGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAAcc                                                               <  2:1049859/100‑1 (MQ=255)
                                       gTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACca                                                              >  1:1929169/1‑100 (MQ=255)
                                       gTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACca                                                              >  2:3256301/1‑100 (MQ=255)
                                       gTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACca                                                              <  2:1001313/100‑1 (MQ=255)
                                           tttttATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATc                                                          >  1:333211/1‑100 (MQ=255)
                                            ttttATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCg                                                         <  2:1133163/100‑1 (MQ=255)
                                             tttATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGc                                                        <  1:3533246/100‑1 (MQ=255)
                                             cacagaacggcggatgcggcaaaaacgccttatccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGc                                                        >  1:2528961‑M2/39‑100 (MQ=255)
                                               tATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcac                                                      >  1:1624772/1‑100 (MQ=255)
                                               tATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcac                                                      <  1:1676124/100‑1 (MQ=255)
                                                aTTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcaca                                                     >  2:2990720/1‑100 (MQ=255)
                                                aTTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcaca                                                     <  2:2732337/100‑1 (MQ=255)
                                                   cGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                                  >  2:3414917/1‑100 (MQ=255)
                                                   cGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                                  >  1:1235409/1‑100 (MQ=255)
                                                   cGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                                  >  1:3543594/1‑100 (MQ=255)
                                                   acggcggatgcggcaaaaacgccttatccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTGTCATGCCTAGAAACGACATCGGACGttt                                                  >  1:179790‑M2/33‑100 (MQ=255)
                                                    gggCGGATAAAGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGACTTATCATGCCTACAAACCACATCGCACATTTc                                                 <  1:2423753/100‑1 (MQ=255)
                                                     GGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTca                                                <  2:781021‑M1/100‑1 (MQ=255)
                                                     GGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTca                                                >  1:3076937‑M1/1‑100 (MQ=255)
                                                      GCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaa                                               >  2:3242038‑M1/1‑100 (MQ=255)
                                                       atctTAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaac                                              >  1:2538568‑M1/5‑100 (MQ=255)
                                                        GGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaaca                                             >  2:2030789‑M1/1‑100 (MQ=255)
                                                           TAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAtttcaacagat                                          <  2:2538582‑M1/100‑4 (MQ=255)
                                                            aaGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatct                                         >  1:510661/1‑100 (MQ=255)
                                                            aaGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatct                                         >  2:3198325/1‑100 (MQ=255)
                                                              ggCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctat                                       >  1:3312805/1‑100 (MQ=255)
                                                              ggCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctat                                       >  1:1839604/1‑100 (MQ=255)
                                                              ggCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctat                                       >  2:3387829/1‑100 (MQ=255)
                                                               gCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctatc                                      >  2:1570224/1‑100 (MQ=255)
                                                               gCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctatc                                      <  2:2387274/100‑1 (MQ=255)
                                                                   ttttGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTc                                  <  1:3273115/100‑1 (MQ=255)
                                                                   ttttGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTc                                  <  2:1203707/100‑1 (MQ=255)
                                                                    tttGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCa                                 >  2:816086/1‑100 (MQ=255)
                                                                      tGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCAt                                <  1:1995424/99‑1 (MQ=255)
                                                                      tGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATc                               <  1:571728/100‑1 (MQ=255)
                                                                       gCCGCATCCGCCGTTCTGTGCACAATCCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCACATCGCACATTTCAACAATCTATTTTTCATcc                              >  2:2228906/1‑100 (MQ=255)
                                                                         cGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCa                            <  2:3699376/100‑1 (MQ=255)
                                                                          gCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCat                           <  2:2565812/100‑1 (MQ=255)
                                                                            atccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCatat                         >  2:2596232‑M2/8‑100 (MQ=255)
                                                                             tccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATAtt                        >  2:699456‑M2/7‑100 (MQ=255)
                                                                              ccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtc                       >  1:1911957‑M2/6‑100 (MQ=255)
                                                                               cgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtca                      >  2:1506974‑M2/5‑100 (MQ=255)
                                                                               cgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtca                      >  2:533608‑M2/5‑100 (MQ=255)
                                                                               cgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtca                      >  1:2901358‑M2/5‑100 (MQ=255)
                                                                               cgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtca                      <  1:2299310‑M2/96‑1 (MQ=255)
                                                                                   gTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCaa                  <  2:3262674/100‑1 (MQ=255)
                                                                                     tCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACa                <  2:145199/100‑1 (MQ=255)
                                                                                        gtgCACAATGCCTGATGCGACGCTGTCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATcc             <  1:2476615/100‑1 (MQ=255)
                                                                                        gtgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATcc             >  2:2671888/1‑100 (MQ=255)
                                                                                         tgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTGATCCCATATTCATCAACATCCg            <  1:2149480/100‑1 (MQ=255)
                                                                                         tgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCg            >  1:1136316/1‑100 (MQ=255)
                                                                                         tgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCg            >  1:3236273/1‑100 (MQ=255)
                                                                                          gCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGc           >  2:1439515/1‑100 (MQ=255)
                                                                                           cacaATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCt          <  1:2843825/100‑1 (MQ=255)
                                                                                             caATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCtat        <  1:533605/100‑1 (MQ=255)
                                                                                              aaTGCCTGATGCGACGCTGGCGCGTCTTATCAggcattgtgcacagaacggcggatgcggcaaaaacgccttatccgcccgaataaaaattacttctgcg       <  1:651118‑M2/100‑69 (MQ=255)
                                                                                                tGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCtattat     <  2:1293903/100‑1 (MQ=255)
                                                                                                  ccTGATGCGACGCTGGCGCGTCGCATCAggcattgtgcacagaacggcggatgcggcaaaaacgccttatccgcccgaataaaaattacttctgcgctgc   <  2:253998‑M2/100‑73 (MQ=255)
                                                                                                  ccTGATGCGACGCTGGCGCGTCGCATCAggcattgtgcacagaacggcggatgcggcaaaaacgccttatccgcccgaataaaaattacttctgcgctgc   <  2:1921201‑M2/100‑73 (MQ=255)
                                                                                                   cTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGa  <  2:3135571/100‑1 (MQ=255)
                                                                                                   cTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGa  >  2:2979577/1‑100 (MQ=255)
                                                                                                   cTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGa  >  2:2111759/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
GTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGA  >  NC_000913/2808082‑2808280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.