New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4008401 =NA (NA)9 (0.070) 7/164 NT NA noncoding (5/34 nt) REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4008431 = NA (NA)intergenic (+54/+8) rhtC/rhtB threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump

Only 100 of 226 total aligned reads displayed.

TCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCT  >  NC_000913/4008302‑4008500
                                                                                                   |                                                                                                   
tCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAg                                                                                                     <  1:389049/100‑1 (MQ=255)
 ggaccaaagcagatgaaggcgctgaataagattttcggctggttgtttatgctggggggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGt                                                                                                    <  2:2584641‑M1/2‑1 (MQ=255)
 ggaccaaagcagatgaaggcgctgaataagattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGt                                                                                                    <  2:861778‑M1/2‑1 (MQ=255)
 ggaccaaagcagatgaaggcgctgaataagattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGt                                                                                                    <  1:1967564‑M1/2‑1 (MQ=255)
   ggCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCg                                                                                                  >  2:1491735/1‑100 (MQ=255)
    gCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCgg                                                                                                 >  1:3287030/1‑100 (MQ=255)
    gCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCgg                                                                                                 >  2:3553262/1‑100 (MQ=255)
    gCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCg                                                                                                  <  1:2534956/99‑1 (MQ=255)
     caaagcagatgaaggcgctgaataagattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGa                                                                                                <  1:346079‑M1/6‑1 (MQ=255)
       aaGTGGATTGATGTTTTTGCCGGGGCGTTAGTTGCCGGCTTTGGCCGTCATTTGATTATTTCGCGGTGATGCCAGGCGCGTCTTCAGAGTAAGTGGGGTa                                                                                              >  1:2285982/1‑100 (MQ=255)
        aGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATaa                                                                                             >  1:1706173/1‑100 (MQ=255)
         gTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAg                                                                                            >  2:3633326/1‑100 (MQ=255)
           ggATTGNTGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGc                                                                                          <  2:3248907/100‑1 (MQ=255)
           ggATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGc                                                                                          <  2:1658634/100‑1 (MQ=255)
              ttGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGtt                                                                                       >  2:19888/1‑100 (MQ=255)
               tGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGttt                                                                                      <  1:1106681/100‑1 (MQ=255)
                gATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTa                                                                                     >  1:3509358/1‑100 (MQ=255)
                 aTGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTAc                                                                                    >  1:2330019/1‑100 (MQ=255)
                  tGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTGTTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTAcg                                                                                   <  1:2738806/100‑1 (MQ=255)
                  tGGTGTTTCCGGTGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGTGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTAcg                                                                                   <  1:67766/100‑1 (MQ=255)
                    gTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTAcgcc                                                                                 <  1:3023728/100‑1 (MQ=255)
                      tttGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTAcgccgc                                                                               >  1:955677/1‑100 (MQ=255)
                         gCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATc                                                                            <  2:2968803/100‑1 (MQ=255)
                           cGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATcc                                                                           <  2:2911138/99‑1 (MQ=255)
                              gattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGATAAGGCGTTTACGCCGCATCCGACa                                                                       >  1:97699‑M1/70‑100 (MQ=255)
                               gCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGAGGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGActt                                                                      <  1:2459688/100‑3 (MQ=25)
                               attttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGATAAGGCGTTTACGCCGCATCCGACat                                                                      >  2:208413‑M1/69‑100 (MQ=255)
                                cGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGActt                                                                      <  1:1187556/99‑3 (MQ=37)
                                cGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACatt                                                                     <  1:1631187/100‑1 (MQ=255)
                                cGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACatt                                                                     >  1:2298081/1‑100 (MQ=255)
                                 tttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGATAAGGCGTTTACGCCGCATCCGACatta                                                                    >  2:2602047‑M1/67‑100 (MQ=255)
                                 gTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACatta                                                                    >  1:3612968/1‑100 (MQ=255)
                                 gTTATTGGCCGGATTTGGCATTCATTTGATTATCTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACatta                                                                    <  1:3178359/100‑1 (MQ=255)
                                   tcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGATAAGGCGTTTACGCCGCATCCGACattatt                                                                  >  1:393011‑M1/65‑100 (MQ=255)
                                    aTTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAttt                                                                 >  1:3411517/1‑100 (MQ=255)
                                    aTTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAttt                                                                 >  1:1864216/1‑100 (MQ=255)
                                     tttGCCGTATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAtttt                                                                <  2:1079167/100‑1 (MQ=255)
                                     tttGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAtttt                                                                <  2:2119623/100‑1 (MQ=255)
                                      gctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGATAAGGCGTTTACGCCGCATCCGACATTAttttt                                                               >  2:768243‑M1/62‑100 (MQ=255)
                                        gCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCa                                                             <  2:1577933/100‑1 (MQ=255)
                                        gCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCa                                                             <  1:2054943/100‑1 (MQ=255)
                                        gCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCa                                                             >  1:2858023/1‑100 (MQ=255)
                                         ccGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCa                                                             <  1:2193663/99‑1 (MQ=255)
                                         ccGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCAc                                                            >  2:1224311/1‑100 (MQ=255)
                                         ccGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCAc                                                            <  2:1605303/100‑1 (MQ=255)
                                         ccGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCAc                                                            <  1:2955490/100‑1 (MQ=255)
                                         ccGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCAc                                                            <  2:2279630/100‑1 (MQ=255)
                                         ccGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCAc                                                            <  1:2415865/100‑1 (MQ=255)
                                           ggATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGc                                                          <  1:1014215/100‑1 (MQ=255)
                                            gATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCa                                                         <  2:1472684/100‑1 (MQ=255)
                                              tttGGCATTCATTTGATTATTTGGCGTTGATGCCAGACGCGTCGTCAGAGTAATCCGGATAAGGCGTTTACGCCTCATCCGACATTATTTTTc                                                              <  1:2273813/93‑1 (MQ=37)
                                              tttGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATg                                                       <  1:1661939/100‑1 (MQ=255)
                                              tgtGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTGTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATg                                                       <  1:2403230/98‑1 (MQ=255)
                                                tGGCATTCATTGGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGGCGGATAAGGCGTTTACGGCGCATCCGACATTATTTTTCACGCATGcc                                                     >  1:639806/1‑100 (MQ=255)
                                                 ggCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCt                                                    >  1:1480329/1‑100 (MQ=255)
                                                  gCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTc                                                   <  2:3287055/100‑1 (MQ=255)
                                                   cattcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCg                                                  >  1:422390/1‑100 (MQ=255)
                                                   cattcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCg                                                  >  2:90739/1‑100 (MQ=255)
                                                   cattcattTGATTATTTCGCGGTGATGCCAGACGAGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCg                                                  <  1:1951533/100‑1 (MQ=255)
                                                     ttcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGcc                                                <  2:1755872/100‑1 (MQ=255)
                                                         tttGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATg                                            >  2:1825177/1‑100 (MQ=255)
                                                          ttGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTCTTTTTCACGCATGCCTCGCCGATGc                                           >  1:794175/1‑100 (MQ=255)
                                                           tGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCt                                          >  1:1356148/1‑100 (MQ=255)
                                                           tGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCt                                          <  2:2704696/100‑1 (MQ=255)
                                                            nattattTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTa                                         >  2:1842582/2‑100 (MQ=255)
                                                            gATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTa                                         >  2:1967577/1‑100 (MQ=255)
                                                             attattTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTaa                                        <  2:2298094/100‑1 (MQ=255)
                                                             attattTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTaa                                        <  2:804103/100‑1 (MQ=255)
                                                              ttattTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAAc                                       <  1:3116795/100‑1 (MQ=255)
                                                                 tttCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgc                                    <  1:171178/100‑1 (MQ=255)
                                                                 tttCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgc                                    >  2:2949432/1‑100 (MQ=255)
                                                                  ttCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgcg                                   <  2:243628/100‑1 (MQ=255)
                                                                    cgcgGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgcgc                                  <  1:2110102/99‑1 (MQ=255)
                                                                      cgGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTcc                               >  2:3167381/1‑100 (MQ=255)
                                                                            tGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCccacc                           >  1:193939/1‑98 (MQ=255)
                                                                            tGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAg                         >  1:2696400/1‑100 (MQ=255)
                                                                             gCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGc                        <  1:1143288/100‑1 (MQ=255)
                                                                              ccAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCa                       >  1:2513140/1‑100 (MQ=255)
                                                                              ccAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCa                       <  2:2809800/100‑1 (MQ=255)
                                                                              ccAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCa                       >  1:669132/1‑100 (MQ=255)
                                                                               cAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCAt                      >  1:877856/1‑100 (MQ=255)
                                                                                 gACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATaa                    <  2:3380370/100‑1 (MQ=255)
                                                                                   cgcgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaac                  <  2:2330032/100‑1 (MQ=255)
                                                                                   cgcgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaac                  >  2:597028/1‑100 (MQ=255)
                                                                                   cgcgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaac                  >  1:1569578/1‑100 (MQ=255)
                                                                                    gcgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaaca                 <  1:2628267/100‑1 (MQ=255)
                                                                                    gcgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaaca                 <  1:2009305/100‑1 (MQ=255)
                                                                                    gcgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaaca                 <  2:3612996/100‑1 (MQ=255)
                                                                                     cgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaacaa                >  2:3059033/1‑100 (MQ=255)
                                                                                       tCTTCATAGTTATTCGGATATTGCGTTTACGCCGCATCCGCCATCATTTTTCACGCCTGCCTCGCCGATTCTAACAGCTCTCCCACCAGCATaac                   <  1:2553271/95‑2 (MQ=255)
                                                                                       tCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACg              <  1:1368611/100‑1 (MQ=255)
                                                                                        tgaaaaataatGTCGGATGCGGCGTAAACGCCTTATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGa             <  2:1107459‑M1/89‑1 (MQ=255)
                                                                                           cAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGcc          <  2:923771/100‑1 (MQ=255)
                                                                                             gagTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGa        >  1:2409039/1‑100 (MQ=255)
                                                                                             gagTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGa        >  2:2528422/1‑100 (MQ=255)
                                                                                               gTAATTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGa        <  2:458225/98‑1 (MQ=255)
                                                                                                 aaGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAAt    >  2:3477424/1‑100 (MQ=255)
                                                                                                  tGTCGGATGCGGCGTAAACGCCTTATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATc   <  2:1405482‑M1/99‑1 (MQ=255)
                                                                                                  aGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATc   >  2:2990313/1‑100 (MQ=255)
                                                                                                   GTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCt  <  2:276600‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TCTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCT  >  NC_000913/4008302‑4008500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.