New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4168377 =	3 (0.020)	4 (0.030)	4/168	NT	58.6%	noncoding (6/76 nt)	gltT	tRNA‑Glu
	?	NC_000913	4209763 =	NA (NA)					intergenic (+75/‑11)	rrsE/gltV	16S ribosomal RNA of rrnE operon/tRNA‑Glu

AGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGA  >  NC_000913/4168278‑4168476                                                                                                    |                                                                                                    caaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgc                                                                                                     <  1:1083981‑M1/1‑1 (MQ=255) caaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgc                                                                                                     <  2:788560‑M1/1‑1 (MQ=255) caaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgc                                                                                                     <  1:2097841‑M1/1‑1 (MQ=255)  aaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCt                                                                                                    >  2:1385205‑M1/99‑100 (MQ=255)   cgatctcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCtt                                                                                                   >  1:3337729‑M1/98‑100 (MQ=255)   aaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCtt                                                                                                   <  2:3680898‑M1/3‑1 (MQ=255)   aaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCtt                                                                                                   <  1:1917394‑M1/3‑1 (MQ=255)   aaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCtt                                                                                                   <  2:2973101‑M1/3‑1 (MQ=255)    accagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCTTc                                                                                                  <  1:111154‑M1/4‑1 (MQ=255)     ccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCTTCg                                                                                                 >  2:1740037‑M1/96‑100 (MQ=255)     ccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCTTCg                                                                                                 <  1:233422‑M1/5‑1 (MQ=255)     ccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCTTCg                                                                                                 >  1:2558695‑M1/96‑100 (MQ=255)     ccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCTTCg                                                                                                 >  2:1345162‑M1/96‑100 (MQ=255)     ccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCTTCg                                                                                                 >  2:3213391‑M1/96‑100 (MQ=255)      cagcaagtggcgtcccctagggtattcgaacccctgttaccgccgtcaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCTTCg                                                                                                 <  1:535333‑M1/5‑1 (MQ=255)         caagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgcttagatcg                                                                                             <  2:3337754‑M1/9‑7 (MQ=255)            atagcaTAAGGCCGTTCTCTTTATCTTAATGGAAGCTCGCCCTACACGAAAATCTCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTagag                                                                                          <  1:3110585/95‑1 (MQ=1)               gattAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGCAAATATCACGCAACGCGTCATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGc                                                                                        >  1:1021676/4‑99 (MQ=0)                                                          cgcaactaccACGCAACGCGTTATCAGCCATGTCCCTGTCCCGTTCGTCTAGACGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATcc                                             <  1:2803888/90‑1 (MQ=1)                                                                         tctagacgaaggggacgtatcagtctgCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACt                             <  1:1341374‑M1/73‑1 (MQ=255)                                                                            agacgaaggggacgtatcagtctgCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGc                          <  2:415404‑M1/76‑1 (MQ=255)                                                                             gacgaaggggacgtatcagtctgCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCt                         <  1:1448279‑M1/77‑1 (MQ=255)                                                                              acgaaggggacgtatcagtctgCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCt                         <  1:699328‑M1/77‑1 (MQ=255)                                                                                       actgatacgtctgCTTCGTGTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATACCCTAGGGGACGCCGCTTGCTGGTTtgtg                 >  2:1150243‑M1/14‑98 (MQ=255)                                                                                                   nCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCg   <  2:2952574‑M1/99‑1 (MQ=255)                                                                                                    CTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGTCGGTAACAGGGGAGCGAATCCCCTAGGGGACGCCACTTGCTGGTTGGTGAGGGAGAGTCGCCg   <  1:304760‑M1/99‑1 (MQ=255)                                                                                                    CTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGa  <  1:1319159‑M1/100‑1 (MQ=255)                                                                                                    |                                                                                                    AGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGA  >  NC_000913/4168278‑4168476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.