| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 580896 | 59 (0.450) | 9 (0.070) | 7/166 | NT | 16.5% | coding (63/546 nt) | nohD | DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | 1636284 = | 36 (0.290) | pseudogene (84/528 nt) | nohQ | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin | |||||
TCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAGGGAT > NC_000913/580797‑580995 | tCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAAC < 1:930607‑M1/100‑1 (MQ=255)tCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAAC < 2:1089181‑M1/100‑1 (MQ=255) cGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACt < 2:32003/100‑1 (MQ=255) gTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTg > 2:593714/1‑100 (MQ=255) ccTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑g < 2:1003256/100‑1 (MQ=255) cTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑gg < 2:3643936/100‑1 (MQ=255) cTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑gg > 1:397216/1‑100 (MQ=255) cTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑gg > 2:1357837/1‑100 (MQ=255) cTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑g < 1:3661293/99‑1 (MQ=40) cTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑g < 1:742165/99‑1 (MQ=40) tttCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑gg < 2:1282633/99‑1 (MQ=40) tctcTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAAc < 2:57569/100‑1 (MQ=255) ctctGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACa > 1:361814/1‑100 (MQ=40) ctctGTTTTTGTCCGTGGAATGTGCAAGGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCAGTACCATTCAGAACTGGCA‑GGAACa > 1:1864258/1‑100 (MQ=255) ctGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAgg < 1:1866315/100‑1 (MQ=40) ctGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAgg > 2:2139462/1‑100 (MQ=255) ctGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAgg < 2:3259649/100‑1 (MQ=255) tGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAggg > 1:1129280/1‑100 (MQ=40) gTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGAGATTTGCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGa > 1:2268579/1‑100 (MQ=255) gTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGa > 2:527161/1‑100 (MQ=255) gTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTGTCGGTTCGAGTATCCGTAACATTCAGAACTGGCAGGGAACAgga > 2:3317329/1‑99 (MQ=14) gTTTTTGTCCGGGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTGCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGa < 2:3469667/100‑1 (MQ=255) tttttGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACtggcattccctgttcc < 1:798965‑M1/100‑17 (MQ=255) tttttGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGaa < 2:3454294/100‑1 (MQ=40) tttGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATg > 1:3160837/1‑100 (MQ=255) tttGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATg < 2:3260717/100‑1 (MQ=255) tGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGcc < 1:1300887/100‑1 (MQ=40) tGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGcc < 1:3041552/100‑1 (MQ=255) tGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGcc < 1:2120707/100‑1 (MQ=40) tGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGcc < 2:2055686/100‑1 (MQ=40) gTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGCGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGccc > 1:959134/1‑100 (MQ=255) gTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGccc > 2:2102758/1‑100 (MQ=40) tCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCg < 1:84839/100‑1 (MQ=38) ccGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTAGGTGCGAGTATCCGTACCATCCAGACCTGGCC‑GGAACAGTGAATcccag > 1:3442405/1‑97 (MQ=11) cgcggAAGGTGCATTGGAAGTCAACAAAACGCAGCTTGATGACATTTCCGGTGCGAGTATCCGTACCATTAAGAACTGGCA‑GGAACAGGGAATGCCCGt < 1:922559/96‑1 (MQ=11) cGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGtt > 1:2195255/1‑100 (MQ=38) gTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACgggcattccctgttcctgccagttc < 1:3281365‑M1/100‑26 (MQ=255) gTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATACGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTc > 1:1282351/1‑100 (MQ=38) ggAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACgggcattccctgttcctgccagttct < 2:242981‑M1/99‑27 (MQ=255) aaTGTGCAATGGAAGTCAACAAAAAGTAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCg < 1:201328/100‑1 (MQ=25) aaTGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACgggcattccctgttcctgccagttctgaa < 2:2870920‑M1/100‑30 (MQ=255) tgtgCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACgggcattccctgttcctgccagttctgaatg < 2:1967649‑M1/100‑32 (MQ=255) tgtgCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAg > 2:3128921/1‑100 (MQ=33) tgtgCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAg < 1:1614271/100‑1 (MQ=33) agtgCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAg < 1:1085425/99‑1 (MQ=17) gtgCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACgggcattccctgttcctgccagttctgaatgg < 1:846027‑M1/100‑33 (MQ=255) gtgCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAgg > 1:903185/1‑100 (MQ=32) gaacaatGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACgggcattccctgttcctgccagttctgaatgg < 2:2158804‑M1/97‑33 (MQ=255) gaacaatGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACgggcattccctgttcctgccagttctgaatgg < 2:2316892‑M1/97‑33 (MQ=255) tgCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACgggcattccctgttcctgccagttctgaatggt < 1:1416037‑M1/100‑34 (MQ=255) tgCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGc > 1:2964832/1‑100 (MQ=31) gCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCg > 2:135079/1‑100 (MQ=11) gAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATa > 1:2900669/1‑100 (MQ=32) aTCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAAt < 1:950076/100‑1 (MQ=35) tCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATg < 2:1912597/100‑1 (MQ=38) tCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCAGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATg < 1:1476940/100‑1 (MQ=255) tCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTACGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATg > 2:3623022/1‑100 (MQ=255) ccGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATgg < 2:884358/100‑1 (MQ=38) ccGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATgg > 1:685597/1‑100 (MQ=38) cGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGt < 2:1171344/100‑1 (MQ=38) cGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGt > 1:2168555/1‑100 (MQ=38) cGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGt < 2:685602/100‑1 (MQ=38) gTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTa < 1:1289442/100‑1 (MQ=38) tACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTAt > 1:1178893/1‑100 (MQ=38) tACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTAt < 2:264503/100‑1 (MQ=38) tACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTAt < 1:282986/100‑1 (MQ=38) aCCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGCGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATg > 2:855978/1‑100 (MQ=255) aCCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATgg > 1:634296/1‑96 (MQ=35) ccATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGc < 2:552520/100‑1 (MQ=38) ccATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGc > 2:44918/1‑100 (MQ=38) cATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGcc < 2:3092995/100‑1 (MQ=38) aTTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGCCg < 1:3000992/100‑1 (MQ=38) cAGAACgggcattccctgttcctgccagttctgaatggtacggatactcgcaccgaaaatgtcagccagctgctttttgttgacttccattgttcattcc < 2:945887‑M1/100‑95 (MQ=255) aGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAg < 2:745079/100‑1 (MQ=38) gAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAgg > 1:2147188/1‑100 (MQ=38) gAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAgg < 2:3049788/100‑1 (MQ=38) aaCgggcattccctgttcctgccagttctgaatggtacggatactcgcaccgaaaatgtcagccagctgctttttgttgacttccattgttcattccacg > 2:1210583‑M1/1‑3 (MQ=255) aaCTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAggg < 1:3425688/100‑1 (MQ=35) aaCTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAggg < 2:3194113/100‑1 (MQ=38) aCgggcattccctgttcctgccagttctgaatggtacggatactcgcaccgaaaatgtcagccagctgctttttgttgacttccattgttcattccacgg > 2:436449‑M1/1‑2 (MQ=255) aCTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAgggn < 2:1544496/100‑2 (MQ=38) cgggcattccctgttcctgccagttctgaatggtacggatactcgcaccgaaaatgtcagccagctgctttttgttgacttccattgttcattccacggc > 2:1499350‑M1/1‑1 (MQ=255) cTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAGGGAt > 2:1231318/1‑100 (MQ=38) | TCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCAGAACTGGCA‑GGAACAGGGAATGCCCGTTCTGCGAGGCGGTGGCAAGGGTAATGAGGTGCTTTATGACTCTGCCGCCGTCATAAAATGGTATGCCGAAAGGGAT > NC_000913/580797‑580995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |