| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 580896 | 59 (0.450) | 9 (0.070) | 7/166 | NT | 16.5% | coding (63/546 nt) | nohD | DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | 1636284 = | 36 (0.290) | pseudogene (84/528 nt) | nohQ | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin | |||||
CTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCC > NC_000913/1636185‑1636383 | cTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACg < 2:228092/100‑1 (MQ=38) ttttCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACgn < 1:3637522/100‑2 (MQ=38) ttagTTCTCAATTTCAGCATCCCTTTCGTCATATTATCTTATAACCACGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAATgg > 1:1030881/4‑98 (MQ=11) ttCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGc < 1:1517300/100‑1 (MQ=38) ttCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTc > 2:486564/1‑100 (MQ=38) ctcAATTTCATCGTCCCTTTCGGCATACCATCTTATAACCGCAACAAAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTccc > 1:1659264/1‑100 (MQ=11) ctcAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTccc > 1:372130/1‑100 (MQ=38) cAATTTCATCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGCGCCTTCCCTg > 1:1683200/1‑100 (MQ=255) cAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGTGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTg > 2:117627/1‑100 (MQ=255) cAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATACAGCACCTCATTACACTTGCAACCGCCTCGCAGAACGGGCATCCCCt > 1:1289129/1‑99 (MQ=11) cAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTg > 2:1694074/1‑100 (MQ=38) tttttgtccgtggaatgtgcaatggaagtcaacaaaaagcagctggctgacattttcggtgcgagtatccgtaccattcagaacTGGCATTCCCTGTTcc < 1:798965‑M2/16‑1 (MQ=255) cagcagCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTg < 2:3565194/100‑1 (MQ=38) cAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTg > 2:1236283/1‑100 (MQ=38) cAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTg > 1:2554260/1‑100 (MQ=38) cAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTg < 1:1606396/100‑1 (MQ=38) aGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGc > 1:3350300/1‑100 (MQ=38) aGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAACACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGc < 1:1508419/100‑1 (MQ=25) gCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGcc > 2:2043677/1‑100 (MQ=38) aTCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAg < 2:1138598/100‑1 (MQ=38) tCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCCTTCCCTGTTCCTGCCAGt > 1:491312/1‑100 (MQ=38) gtggaatgtgcaatggaagtcaacaaaaagcagctggctgacattttcggtgcgagtatccgtaccattcagaacGGGCATTCCCTGTTCCTGCCAGTTc < 1:3281365‑M2/25‑1 (MQ=255) ccTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTc > 2:2944545/1‑100 (MQ=38) cTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCt < 2:1390663/100‑1 (MQ=35) cTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCt < 1:3380775/100‑1 (MQ=38) tttCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTg < 2:3371543/100‑1 (MQ=35) ggaatgtgcaatggaagtcaacaaaaagcagctggctgacattttcggtgcgagtatccgtaccattcagaacGGGCATTCCCTGTTCCTGCCAGTTCt < 2:242981‑M2/26‑1 (MQ=255) aatgtgcaatggaagtcaacaaaaagcagctggctgacattttcggtgcgagtatccgtaccattcagaacGGGCATTCCCTGTTCCTGCCAGTTCTGaa < 2:2870920‑M2/29‑1 (MQ=255) tgtgcaatggaagtcaacaaaaagcagctggctgacattttcggtgcgagtatccgtaccattcagaacGGGCATTCCCTGTTCCTGCCAGTTCTGAATg < 2:1967649‑M2/31‑1 (MQ=255) gtgcaatggaagtcaacaaaaagcagctggctgacattttcggtgcgagtatccgtaccattcagaacGGGCATTCCCTGTTCCTGCCAGTTCTGAATgg < 1:846027‑M2/32‑1 (MQ=255) gaacaatggaagtcaacaaaaagcagctggctgacattttcggtgcgagtatccgtaccattcagaacGGGCATTCCCTGTTCCTGCCAGTTCTGAATgg < 2:2316892‑M2/32‑1 (MQ=255) gaacaatggaagtcaacaaaaagcagctggctgacattttcggtgcgagtatccgtaccattcagaacGGGCATTCCCTGTTCCTGCCAGTTCTGAATgg < 2:2158804‑M2/32‑1 (MQ=255) gCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATgg > 1:1888738/1‑100 (MQ=38) tgcaatggaagtcaacaaaaagcagctggctgacattttcggtgcgagtatccgtaccattcagaacGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGt < 1:1416037‑M2/33‑1 (MQ=255) tACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTAc < 1:513571/100‑1 (MQ=38) tACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTAc < 2:2396034/100‑1 (MQ=38) tACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTAc < 2:24004/100‑1 (MQ=35) aCCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACg > 2:1273265/1‑100 (MQ=38) cATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGa < 1:251269/100‑1 (MQ=38) cATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGa < 2:3210599/100‑1 (MQ=38) nagaaCGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCGAACGCCTCGCCGAACGCGCATTCACTGTTACTCACAATTCTGAATGGTCCGGCTAc > 1:1606994/4‑98 (MQ=11) ataACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCg > 1:726599/1‑100 (MQ=32) ataACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCg > 1:723623/1‑100 (MQ=32) ataACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCg > 1:417808/1‑100 (MQ=32) taACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGc < 2:32008/100‑1 (MQ=31) aCCCTTGCCACCGCATCGCAGAACGGGCATTCCCTGTTACTGCCAGTTCTGCATGATACGAATGCTCGCGCCGACAATGTCATGCAAACGCGTTttgttg > 1:1333342/1‑100 (MQ=0) cccccTCGCAGAGCGGCCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCAt < 1:707894/95‑1 (MQ=0) cGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGt < 1:1009892/100‑1 (MQ=11) cGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGt < 1:3040430/100‑1 (MQ=11) gCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGtt > 2:3224713/1‑100 (MQ=31) cTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGtt < 1:1883135/98‑1 (MQ=31) tCGCAGAACGGGGATTCCCTGTTCCTGCCAGTTCTGACTGGTACGGATGCTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTc < 1:3513179/98‑1 (MQ=255) tCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCAt < 2:193391/100‑1 (MQ=35) cGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCAtt > 1:1343880/1‑100 (MQ=35) cGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCAtt > 2:2639935/1‑100 (MQ=35) gCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTc < 2:1914132/100‑1 (MQ=38) gCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTc > 2:313922/1‑100 (MQ=38) gCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTc < 1:2932046/100‑1 (MQ=38) gCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTc > 1:2308082/1‑100 (MQ=38) cagaacGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTcc < 2:945887‑M2/94‑1 (MQ=255) aacGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACg > 2:1210583‑M2/4‑100 (MQ=255) acGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACgg > 2:436449‑M2/3‑100 (MQ=255) cGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGc > 2:1499350‑M2/2‑100 (MQ=255) gggCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTTTTCATTCCACGGcc > 1:144356/1‑100 (MQ=255) | CTTTTCGTTCTCAATTTCAGCATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCC > NC_000913/1636185‑1636383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |