BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4636885	107 (0.810)	6 (0.050)	4/168	NT	5.4%	coding (190/1425 nt)	creC	sensory histidine kinase in two‑component regulatory system with CreB or PhoB
*	?	NC_000913	= 4636902	110 (0.890)	6 (0.050)	4/168	NT	5.4%	coding (207/1425 nt)	creC	sensory histidine kinase in two‑component regulatory system with CreB or PhoB
Rejected: Frequency below cutoff threshold.

Only 100 of 146 total aligned reads displayed.

AGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGC  >  NC_000913/4636803‑4637001

agCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAg                                                                                                     <  1:162374/100‑1 (MQ=255)

  cAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgc                                                                                                   <  2:1360524‑M2/100‑3 (MQ=255)

   aaCGGAGGTGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgcn                                                                                                  >  1:1326251‑M2/1‑97 (MQ=255)

   aaCGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgcg                                                                                                  >  2:3190761‑M2/1‑97 (MQ=255)

   aaCGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgcg                                                                                                  <  2:3525680‑M2/100‑4 (MQ=255)

   aaCGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgcg                                                                                                  <  2:1496944‑M2/100‑4 (MQ=255)

    aCGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgcgt                                                                                                 <  2:2373374‑M2/100‑5 (MQ=255)

     cGGAGGGGACGTTGATCGCCACCGCAACGTTGCTGGCGGAGCTGGCGCGTCACGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgcgtt                                                                                                >  1:920838‑M2/1‑95 (MQ=255)

        aGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTaa                                                                                             >  1:146672/1‑100 (MQ=255)

        aGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTaa                                                                                             <  2:215644/100‑1 (MQ=255)

        aGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTaa                                                                                             >  1:867891/1‑100 (MQ=255)

         ggggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAAt                                                                                            <  2:3597291/100‑1 (MQ=255)

          tcttccgatctCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATc                                                                                           <  1:447025/90‑1 (MQ=255)

           ggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCa                                                                                          <  1:792675/100‑1 (MQ=255)

             aCGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGc                                                                                        <  2:3366772/100‑1 (MQ=255)

              cGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt                                                                                       >  1:296736/1‑100 (MQ=255)

               gTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTa                                                                                      >  1:3649897/1‑100 (MQ=255)

                   aTCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCCACTGGAGCAGGCGTTTAATCAGCTacaac                                                                                  >  1:1218001/1‑100 (MQ=255)

                   aTCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaac                                                                                  <  2:2411135/100‑1 (MQ=255)

                    tCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaaca                                                                                 <  1:1014204/100‑1 (MQ=255)

                     cGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAgatcggaaga                                                                                >  2:447026/1‑91 (MQ=255)

                     cGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACAt                                                                                <  1:3302728/100‑1 (MQ=255)

                     cGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACAt                                                                                >  2:1894164/1‑100 (MQ=255)

                     cGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACAt                                                                                <  2:74759/100‑1 (MQ=255)

                     cGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCCGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACAt                                                                                >  1:1147851/1‑100 (MQ=255)

                      gACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATc                                                                               >  2:2766922/1‑100 (MQ=255)

                      gACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATc                                                                               <  1:2983176/100‑1 (MQ=255)

                       acacCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCg                                                                              >  2:520304/1‑100 (MQ=255)

                           cGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCg                                                                          <  1:3275425/100‑1 (MQ=255)

                            gCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGt                                                                         >  1:2674993/1‑100 (MQ=255)

                            gCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGAGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGt                                                                         >  1:2200336/1‑100 (MQ=255)

                             cAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGtt                                                                        >  2:1826960/1‑100 (MQ=255)

                                cGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTcg                                                                     >  2:1718760/1‑100 (MQ=255)

                                cGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTcg                                                                     >  2:475692/1‑100 (MQ=255)

                                   tGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCgcgc                                                                  >  2:819946/1‑100 (MQ=255)

                                   tGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCgcgc                                                                  >  2:1148960/1‑100 (MQ=255)

                                    gCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGcc                                                                 <  2:85897/100‑1 (MQ=255)

                                          ggAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATc                                                           <  2:2966642/100‑1 (MQ=255)

                                            aGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCgg                                                         <  1:2166024/100‑1 (MQ=255)

                                               tGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTgg                                                      <  2:551964/100‑1 (MQ=255)

                                               tGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTgg                                                      <  1:279898/100‑1 (MQ=255)

                                                ggCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATACCGGTCGc                                                     >  1:3141599/1‑100 (MQ=255)

                                                ggCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGAGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGc                                                     <  2:1218007/100‑1 (MQ=255)

                                                  cgcgTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCAt                                                   >  2:1221886/1‑100 (MQ=255)

                                                   gcgTCCCGATTTGCTCTCTGGGGACCCAACCTATGGACAACTGGCGCAGGCGTATAATCAGCTACAACATCGCCCGCTTCGCGCCAATATCGGTAGCAt                                                   <  1:1231909/99‑1 (MQ=255)

                                                     gTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTaa                                                >  1:3611505/1‑100 (MQ=255)

                                                     gTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTaa                                                >  2:107218/1‑100 (MQ=255)

                                                     gTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTaa                                                <  1:933759/100‑1 (MQ=255)

                                                      tCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAAc                                               >  1:457520/1‑100 (MQ=255)

                                                        ccGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACaa                                             >  1:2731049/1‑100 (MQ=255)

                                                        ccGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACaa                                             <  1:1078053/100‑1 (MQ=255)

                                                        ccGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCACGTTTCGCGCCAACATCGGTCGCATTCACaa                                             >  1:1075389/1‑100 (MQ=255)

                                                        ccGATTTGCTCTCTGGGGACACAACGCATGGGCAACTGGCGCAGGCGTTGAATCAGCTACGACATGGCCCGTTTCGCGCCAATATGGGTGGCATTAACaa                                             >  1:6847/1‑100 (MQ=255)

                                                        ccGAGTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAAc                                               <  1:945404/98‑1 (MQ=255)

                                                               ggtgtctGGGGATCCAGTGCATGGGCGAGTTGCGCAGGCGTCTAATCGTCTACGACATCGCCCGTTTCGCGCAAATATCGGTGGCATTAACAAAGTgc                                        <  1:294970/94‑1 (MQ=255)

                                                               gCTCTCTGGGGACCCAACGCATGGGCAACTGGCGGAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTgcgc                                      <  1:2502102/100‑1 (MQ=255)

                                                                ctctctGGGGACCCAACGCATGGGCAACTGGTGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCa                                     <  2:1386805/100‑1 (MQ=255)

                                                                ctctctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCa                                     >  1:24693/1‑100 (MQ=255)

                                                                 tctctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCaa                                    >  2:2277434/1‑100 (MQ=255)

                                                                   tctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATg                                  <  2:867896/100‑1 (MQ=255)

                                                                   tctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATg                                  <  2:146672/100‑1 (MQ=255)

                                                                      ggggACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAat                               <  1:3291979/100‑1 (MQ=255)

                                                                      ggggACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAat                               <  2:1327602/100‑1 (MQ=255)

                                                                       gggACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGGGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAata                              >  1:2007495/1‑100 (MQ=255)

                                                                       gggACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGa                                 <  1:3478570/97‑1 (MQ=255)

                                                                       gggACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAata                              <  1:1408876/100‑1 (MQ=255)

                                                                          aCCCAACGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccc                           <  1:1958417‑M2/100‑75 (MQ=255)

                                                                          aCCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCa                           <  1:807444/100‑1 (MQ=255)

                                                                           cccAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCan                          <  1:1530898/100‑2 (MQ=255)

                                                                           cccAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCAt                          >  2:550530/1‑100 (MQ=255)

                                                                           cccAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCAt                          >  2:3330582/1‑100 (MQ=255)

                                                                           cccAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCAt                          >  2:1772270/1‑100 (MQ=255)

                                                                           cccAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCACGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCa                           <  1:2551080/99‑1 (MQ=255)

                                                                            ccAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATTAATATCATg                         >  1:1113926/1‑100 (MQ=255)

                                                                            ccAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATg                         >  2:2266893/1‑100 (MQ=255)

                                                                              aaCGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggccgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccctccg                       <  1:2504353‑M2/100‑79 (MQ=255)

                                                                              aaCGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccctccg                       <  2:3227280‑M2/100‑79 (MQ=255)

                                                                              aaCGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTc                       <  2:3494815/100‑1 (MQ=255)

                                                                              aaCGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTc                       <  2:2754825/100‑1 (MQ=255)

                                                                                  cATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCta                     <  1:176792/98‑1 (MQ=255)

                                                                                  cATGGGCAACTGGCGCAGGCGTTTAATCAACTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCtata                   <  2:154703/100‑1 (MQ=255)

                                                                                     gggCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGa                <  1:1394158/100‑1 (MQ=255)

                                                                                      ggCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATTTCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGAc               <  1:2045592/100‑1 (MQ=255)

                                                                                      ggCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGAc               <  1:3517166/100‑1 (MQ=255)

                                                                                      ggCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGAc               >  2:1643559/1‑100 (MQ=255)

                                                                                       tcAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGAcc              <  1:1336592/99‑1 (MQ=255)

                                                                                        cAACTGGCGGAGGGGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCg             <  2:2329109/100‑1 (MQ=255)

                                                                                        cAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATg                 <  2:3556397/96‑1 (MQ=255)

                                                                                        cAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGAcca             >  2:1336598/1‑99 (MQ=255)

                                                                                        cAACGGGCGCAGTCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCATTGAATATCATGTCTATATGACCg             <  1:3219199/100‑1 (MQ=255)

                                                                                          aCTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGAt           >  1:2399832/1‑100 (MQ=255)

                                                                                          aCTGGCGCAGGCGTTTAATCAGCCACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAACGTTCGCAATGAATATCCTGTCTATATGACCTAt           >  1:1972717/1‑100 (MQ=255)

                                                                                            tGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATgc         <  2:307788/100‑1 (MQ=255)

                                                                                                gcAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAg     >  1:2270909/1‑100 (MQ=255)

                                                                                                 cAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAgg    >  2:2871910/1‑100 (MQ=255)

                                                                                                 cAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAgg    <  2:2117951/100‑1 (MQ=255)

                                                                                                  aGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAggg   <  1:2871889/100‑1 (MQ=255)

                                                                                                   ggCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCACTGAATATCATATCTATATGACCGATGCACAg     >  1:1815626/1‑97 (MQ=255)

                                                                                                   ggCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGc  <  2:285256/100‑1 (MQ=255)

                                                                                                   ggCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGc  <  2:1359650/100‑1 (MQ=255)

AGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGC  >  NC_000913/4636803‑4637001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.