New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 474269 =NA (NA)11 (0.090) 5/166 NT NA intergenic (+17/+32) amtB/tesB ammonium transporter/acyl‑CoA thioesterase 2
?NC_000913 474296 = NA (NA)intergenic (+44/+5) amtB/tesB ammonium transporter/acyl‑CoA thioesterase 2

Only 100 of 156 total aligned reads displayed.

AGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTGCGC  >  NC_000913/474197‑474395
                                                                                                   |                                                                                                    
   aGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAtttt                                                                                                   >  1:1687045/1‑100 (MQ=255)
    acccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaatagccggaggtgaaaaccgtccggctgttttt                                                                                                  >  1:498731‑M2/96‑100 (MQ=255)
    acccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaatagccggaggtgaaaaccgtccggctgttttt                                                                                                  >  2:2871350‑M2/96‑100 (MQ=255)
     cccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaatagccggaggtgaaaaccgtccggctgtttttt                                                                                                 >  1:2721987‑M2/95‑100 (MQ=255)
     cccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaatagccggaggtgaaaaccgtccggctgtttttt                                                                                                 >  2:3334935‑M2/95‑100 (MQ=255)
     cccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaatagccggaggtgaaaaccgtccggctgtttttt                                                                                                 >  2:2852604‑M2/95‑100 (MQ=255)
     cccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTAtttttt                                                                                                 >  2:2470986‑M1/68‑100 (MQ=255)
     cGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAtttttt                                                                                                 <  2:921080/100‑1 (MQ=255)
     cGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTACGGCTAttttt                                                                                                  >  1:2570777/1‑99 (MQ=255)
     cGAGAAGGGCTGGATGTCAACACCCACGGCGGGAACGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTAtttttt                                                                                                 <  2:3249234/100‑1 (MQ=255)
      ccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTAttttttt                                                                                                >  2:2967928‑M1/67‑100 (MQ=255)
      ccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTAttttttt                                                                                                >  2:1505415‑M1/67‑100 (MQ=255)
      ccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTAttttttt                                                                                                >  1:2486599‑M1/67‑100 (MQ=255)
      ccaagacggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTAttttttt                                                                                                >  2:2557286‑M1/67‑100 (MQ=255)
       caagacggcgtactggttgcctcgaccgtacaggaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTAttttttt                                                                                                >  1:158590‑M1/66‑99 (MQ=255)
           gggCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATtg                                                                                          <  1:1966154/100‑1 (MQ=255)
           gggCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATtg                                                                                          >  1:777558/1‑100 (MQ=255)
           acggcgtactggttgcctcgaccgttcaggaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATtg                                                                                          >  1:3117062‑M1/62‑100 (MQ=255)
             gCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATtgtg                                                                                        <  2:777563/100‑1 (MQ=255)
             gCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATtgtg                                                                                        <  1:3047499/100‑1 (MQ=255)
             gCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATtgtg                                                                                        >  1:2980873/1‑100 (MQ=255)
             gCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATtgtg                                                                                        <  1:2671065/100‑1 (MQ=255)
             gCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATtgtg                                                                                        >  2:777541/1‑100 (MQ=255)
              gcgtactggttgcctcgaccgttcagtaaggggtgatgcgtaatcacaattaaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTTAATtgtg                                                                                        >  1:2133076‑M1/59‑100 (MQ=255)
                   tGTCAACAGCCACGACGAGAATGACTATAACGGGTAACAAGCACTGGAAAAAACAGCTGGACGGTTTTCACCGCAGGCTATTTTTTT‑AATTGTGATTa                                                                                    >  1:1230525/1‑98 (MQ=255)
                    gTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGc                                                                                 >  1:1308593/1‑100 (MQ=255)
                       aaCAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATc                                                                              >  1:1762097/1‑100 (MQ=255)
                        tcAGCCACGGCGAGAATGCCTATAACGCGTAACATGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCa                                                                             <  1:1951521/99‑1 (MQ=255)
                         cAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCaa                                                                            >  2:1951534/1‑99 (MQ=255)
                         cAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCAc                                                                            >  1:860438/1‑100 (MQ=255)
                           gCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTagatcggaaga                                                                          >  2:2060836/1‑90 (MQ=255)
                           gCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCAccc                                                                          >  1:1962773/1‑100 (MQ=255)
                             cACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCt                                                                        >  2:1206686/1‑100 (MQ=255)
                              aCGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCtt                                                                       <  2:3385197/100‑1 (MQ=255)
                              aCGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCtt                                                                       <  1:535571/100‑1 (MQ=255)
                                ggCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTcc                                                                     <  2:884470/100‑1 (MQ=255)
                                ggCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTcc                                                                     <  2:1951938/100‑1 (MQ=255)
                                 gCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCt                                                                    >  2:2678444/1‑100 (MQ=255)
                                 gCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCt                                                                    <  1:2875327/100‑1 (MQ=255)
                                  ttccgatctcTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTg                                                                   <  2:3641080/91‑1 (MQ=255)
                                  cGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCCTCACCCCTTCCTg                                                                   <  2:2509645/100‑1 (MQ=255)
                                     gaATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAAc                                                                >  2:1805419/1‑100 (MQ=255)
                                     gaATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAAc                                                                >  2:1220619/1‑100 (MQ=255)
                                      aaTGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACg                                                               <  1:3618037/100‑1 (MQ=255)
                                       aTGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACgg                                                              <  1:1478435/100‑1 (MQ=255)
                                       aTGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACgg                                                              <  2:411256/100‑1 (MQ=255)
                                        tGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACgag                                                             >  1:2938150/1‑98 (MQ=255)
                                          ccTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCg                                                           >  2:459132/1‑100 (MQ=255)
                                          ccTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCg                                                           >  2:1868197/1‑100 (MQ=255)
                                           cTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGagatcggaa                                                          >  1:3641051/1‑92 (MQ=255)
                                            tataACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAg                                                         <  2:315183/100‑1 (MQ=255)
                                             ataACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAgg                                                        <  2:2450968/100‑1 (MQ=255)
                                             ataACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAgg                                                        <  1:2698699/100‑1 (MQ=255)
                                             ataACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAgg                                                        <  2:2117405/100‑1 (MQ=255)
                                             ataACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAgg                                                        <  2:2914510/100‑1 (MQ=255)
                                             ataACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGATCGAg                                                         >  1:1875939/1‑99 (MQ=255)
                                              taACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGc                                                       >  1:1698316/1‑100 (MQ=255)
                                              taACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGGCGAGGc                                                       >  2:1090789/1‑100 (MQ=255)
                                               aaCGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCCCCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCa                                                      <  1:2370566/100‑1 (MQ=255)
                                                aCGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCaa                                                     >  2:1369169/1‑100 (MQ=255)
                                                 cgcgTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAAc                                                    >  2:1624300/1‑100 (MQ=255)
                                                 cgcgTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAAc                                                    >  2:2292057/1‑100 (MQ=255)
                                                 cgcgTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATAACCCCTTCCTGAACGGTCGAGGCaa                                                     >  1:3121454/1‑99 (MQ=255)
                                                  gcgTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAAcc                                                   >  1:2852584/1‑100 (MQ=255)
                                                    gTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAg                                                 <  2:170140/100‑1 (MQ=255)
                                                       aCAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGCGGCAACCAGTAc                                              >  1:1536632/1‑100 (MQ=255)
                                                        cAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACg                                             <  2:2027604/100‑1 (MQ=255)
                                                            caattaaaaaaatagccggaggtgaaaaccgtccggctgTTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGt                                         >  2:3307983‑M2/40‑100 (MQ=255)
                                                              attaaaaaaatagccggaggtgaaaaccgtccggctgTTTTTTT‑AATTGTGATTACGCATCACCACTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCt                                       >  2:1476103‑M2/38‑100 (MQ=255)
                                                                gtaaaaaaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTg                                     <  2:2509989‑M1/92‑1 (MQ=255)
                                                                gCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTg                                     >  1:1002776/1‑100 (MQ=255)
                                                                gCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGCCtt                                      >  1:364314/1‑99 (MQ=255)
                                                                gCAAAAAACAGCCGGACGGTTTTCACCCCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTg                                     >  1:780216/1‑100 (MQ=255)
                                                                 cAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTgg                                    <  1:1090783/100‑1 (MQ=255)
                                                                 cAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTgg                                    <  1:3216113/100‑1 (MQ=255)
                                                                 cAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTgg                                    >  1:308029/1‑100 (MQ=255)
                                                                 cAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTgg                                    >  2:1514275/1‑100 (MQ=255)
                                                                 aaaaaaatagccggaggtgaaaaccgtccggctgTTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTgg                                    >  2:2557286‑M2/35‑100 (MQ=255)
                                                                 aaaaaaatagccggaggtgaaaaccgtccggctgTTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTgg                                    >  2:2327692‑M2/35‑100 (MQ=255)
                                                                 aaaaaaatagccggaggtgaaaaccgtccggctgTTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTgg                                    >  1:2486599‑M2/35‑100 (MQ=255)
                                                                 aaaaaaatagccggaggtgaaaaccgtccggctgTTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTgg                                    >  2:2967928‑M2/35‑100 (MQ=255)
                                                                  aaaaaaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTggg                                   >  2:2852604‑M1/7‑100 (MQ=255)
                                                                   aaaaaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGt                                  >  1:498731‑M1/6‑100 (MQ=255)
                                                                    aaaaCAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGta                                 >  1:1514268‑M1/5‑100 (MQ=255)
                                                                        cAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATaaa                             <  2:1278314/100‑1 (MQ=255)
                                                                        cAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATaaa                             >  2:1423926/1‑100 (MQ=255)
                                                                          gCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAGCCAGTACGCCGTCTTGGGTATAAAAc                           <  1:3345167/100‑1 (MQ=255)
                                                                          gCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAAc                           >  2:3229042/1‑100 (MQ=255)
                                                                          gCCGGACGGTGTTCACCTCCGGCTATATGTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAAc                           <  2:993850/100‑1 (MQ=255)
                                                                                  gTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACcgcg                   >  2:2578629/1‑100 (MQ=255)
                                                                                         ccTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAg            >  2:3477660/1‑100 (MQ=255)
                                                                                         ccTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAg            <  1:2407163/100‑1 (MQ=255)
                                                                                           tCCGGCTATTTTTTT‑AATTGCGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGcc          >  1:2259095/1‑100 (MQ=255)
                                                                                            ccGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCa         >  2:1023976/1‑100 (MQ=255)
                                                                                            ccGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCa         >  1:2751471/1‑100 (MQ=255)
                                                                                             cGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCAc        >  2:2688860/1‑100 (MQ=255)
                                                                                             cGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCAc        <  1:1878736/100‑1 (MQ=255)
                                                                                              ggCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACAGGGCACAAAGCCACg       >  2:3323550/1‑100 (MQ=255)
                                                                                                  aTTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTgcg   <  2:3484356/100‑1 (MQ=255)
                                                                                                   TTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTgcgc  <  2:1308599‑M2/100‑1 (MQ=255)
                                                                                                   |                                                                                                    
AGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTT‑AATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTGCGC  >  NC_000913/474197‑474395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.