| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3525478 = | NA (NA) | 5 (0.040) | 4/162 | NT | NA | noncoding (1/98 nt) | RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3525508 = | NA (NA) | noncoding (31/98 nt) | RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP251 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
GTGAAGTTTGCCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3525584‑3525478‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatccggcTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCC > NC_000913/3525508‑3525606 GTGAAGTTTGCCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGT > 2:868015/1‑100GTGAAGTTTGCCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGT > 1:1840998/1‑100 TGAAGTTTGCCTGATGCACAATGTTTATTAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGAATAACGCGTTCACGCCGTA < 1:3375958/100‑1 TGAAGTTTGCCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTA > 1:2868916/1‑100 AGTTTGCCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCC < 1:53759/100‑1 GTTTGCCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCG > 1:649523/1‑100 TTTGCCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGG < 1:2164756/100‑1 ttgatttATGCACAATGTCTATCAGGCTTATGGGGGTTCTGCAATTTATGGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCG < 2:3081583/91‑1 TTGCCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATGCGGC > 2:3382873/1‑100 TTGCCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGC < 2:2710401/100‑1 TTGCCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGC < 1:1784373/100‑1 CTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATACGGCGTGAACGCGTTATCCGGCTAAC < 1:1603014/100‑1 GCCGGATAACGCGTTCACGCCGTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAA > 1:1847636/1‑100 GCCGGATAACGCGTTCACGCCGTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAA > 2:2159363/1‑100 GCCGGATAACGCGTTCACGCCGTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAA > 1:2722910/1‑100 CCGGATAACGCGTTCACGCCGTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAA > 1:788483/1‑99 ACGCGTTCACGCCGTATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACG > 2:662672/1‑100 ttccgatctCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACAC < 1:3385862/91‑1 TATCCGGCTAACAAAATCGGGAAAACGCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCC > 2:3135517/1‑100 ATCCGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCC < 1:397138/100‑1 TCCGGCTAACAAAATCGTGAAAACTCAATATATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCC < 1:3402660/100‑1 CGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACCTTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCC > 1:2883831/1‑97 CGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACagatcggaa > 2:3385886/1‑91 CGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTG < 1:692397/100‑1 CGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTG > 2:2543286/1‑100 CGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTG > 1:798096/1‑100 CGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTG > 1:1006468/1‑100 CGGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTG > 1:2222146/1‑100 GGCTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGC > 2:1456277/1‑100 CTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCC < 1:2759245/100‑1 GTGAAGTTTGCCTGATGCACAATGTTTATCAGGCTTATGGGGTTTCTGCAATTTATTGAGTTTTCACGATTTTGTTAGCCGGATAACGCGTTCACGCCGTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3525584‑3525478‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatccggcTAACAAAATCGTGAAAACTCAATAAATTGCAGAAACCCCATAAGCCTGATAAACATTGTGCATCAGGCAAACTTCACGCATTTACACTCGCCCCTGCCC > NC_000913/3525508‑3525606 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |