| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4148478 | NA (NA) | 8 (0.070) | 5/164 | NT | NA | noncoding (49/82 nt) | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4148511 | NA (NA) | noncoding (82/82 nt) | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
AAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4148380‑4148478‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACA < NC_000913/4148511‑4148406 AAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGG < 1:1558323/100‑1AAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGG < 2:2181166/100‑1AAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGG < 1:58785/100‑1 AAAGTGTGGCCTGAGGGGAGGTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGG < 2:1172852/99‑1 AGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCG < 2:1821303/100‑1 GTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGG < 1:117435/100‑1 GTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGG > 2:1544845/1‑100 GTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGAT < 2:290727/100‑1 TAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATC < 1:3262421/100‑1 AACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCG < 2:2112968/100‑1 AACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCG < 1:793002/100‑1 ACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGG < 2:1450226/100‑1 CATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGGC < 2:477708/100‑1 CATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGGC < 2:2022258/100‑1 TTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGGCCT < 1:1120299/100‑1 GGCAGTTGGTTTGCCGGATGTGGCGTAAACGCCTTACCCAGGCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGGC < 1:3163824/94‑1 GCCGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATG < 2:1469706/100‑1 CCGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCgctct > 2:2170531/1‑95 CCGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGT < 1:3094797/100‑1 CCGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGT > 2:2487921/1‑100 CCGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGT < 1:1113200/100‑1 CGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTT > 2:1078200/1‑100 CGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTT > 2:1281751/1‑100 CGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTT > 2:2849877/1‑100 CGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTT > 2:803701/1‑100 GGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTT > 1:2170552/1‑100 GGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTT < 1:1879934/100‑1 GATGCGGCGCTTGCCGCGTCTTATCCCGCCTACGGATCGCGGCGGTAGGCTGGAGAAGGCGGTTACTCCACATCCGGCAATACAACTGCCGCAATGTTT < 1:141486/99‑1 GATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTA < 1:864745/100‑1 ATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTAC > 1:2084618/1‑100 TGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACA < 2:2650383/100‑1 AAAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4148380‑4148478‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACA < NC_000913/4148511‑4148406 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |