New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 900831	NA (NA)	9 (0.090) +ATCAGCACGGTGCCTG	5/146	NT	NA	noncoding (83/87 nt)	REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	4080019 =	NA (NA)					intergenic (+50/+280)	yiiF/fdhE	putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein

GCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/900794‑900831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCA  >  NC_000913/4080019‑4080070                                       ||||||||||||||||                                                     GCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTgcataa        >  2:1559299/1‑94 GCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTgcataa        >  2:1559567/1‑94   TGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGT‑GCATAAAT     >  1:183575/1‑100    GATGTCTGATGCGACGCTGGCGCGTCTTATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGT‑GCATAAATT    <  1:1559292/100‑1    GATGTCTGATGCGACGCTGGCGCGTCTTATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGT‑GCATAAATT    <  1:1559560/100‑1    GATGTCTGATGCGACGCTGGCGCGTCTTATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGT‑GCATAAATT    >  2:3145103/1‑100     ATGTCTGATGCGACGCTGGCGCGTCTTATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGT‑GCATAAATTC   >  2:196234/1‑100      TGTCTGATGCGACGCTGGCGCGTCTTATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGT‑GCATAAATTCt  >  1:1583791/1‑99      TGTCTGATGCGACGCTGGCGCGTCTTATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGT‑GCATAAATTCt  >  2:694112/1‑99                                       ||||||||||||||||                                                     GCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/900794‑900831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAGTCGTATAAATTCA  >  NC_000913/4080019‑4080070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.