| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1508794 | NA (NA) | 7 (0.060) | 7/166 | NT | NA | noncoding (4/33 nt) | REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 1508823 | NA (NA) | noncoding (33/33 nt) | REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
AGTCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTgccgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1508698‑1508794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCAAT < NC_000913/1508823‑1508721 AGTCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCC < 1:1035280/100‑1AGTCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCC > 1:968772/1‑100 TCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGG < 1:3253102/100‑1 CGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGG > 1:2047832/1‑98 CATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACC < 1:542269/100‑1 CGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAG < 1:20499/100‑1 GAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAGG < 2:1312772/100‑1 AGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCA < 1:1795253/100‑1 GGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGC < 2:2832961/100‑1 AAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGA < 2:3386416/100‑1 TTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTT < 2:2963942/100‑1 TGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCCTGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGG > 1:277981/1‑100 TGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGG > 2:14313/1‑100 TGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGG < 1:2378986/100‑1 TGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGG < 2:3146109/100‑1 GCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAACCTGGCGTTTTACCCTTTTCGCTTCGG < 2:2077664/99‑1 GCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGC < 2:2269990/100‑1 CCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCA > 2:1700172/1‑100 CCGGATGCGGCGTAACGCCTTACCCGACAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCA > 1:2968780/1‑100 GGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCAAT < 1:1223004/100‑1 AGTCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTgccgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1508698‑1508794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCAAT < NC_000913/1508823‑1508721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |