New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2041152 =	NA (NA)	16 (0.140)	10/162	NT	NA	noncoding (1/34 nt)	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	2041182 =	NA (NA)					noncoding (31/34 nt)	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences

TATTGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2041257‑2041152 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAA  >  NC_000913/2041182‑2041280                                                                                                                                                                                                               taagGAAATAAAATAAAGTCTTTTGGGGATTTGAGGTTGATGACAAACGAAACATACCCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACA                                                                                                           <  1:1040998/96‑1   TTGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATC                                                                                                         >  2:2603335/1‑100    TGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCC                                                                                                        <  2:2012749/100‑1      AAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGG                                                                                                      >  2:2106588/1‑100      AAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCG                                                                                                       <  2:2658163/99‑1       AATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATTTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGC                                                                                                     <  1:1825097/100‑1       AATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATGTGGCGCGAGCGCCCTATCCGGC                                                                                                     <  2:2478562/100‑1       AATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGC                                                                                                     >  1:3189635/1‑100       AATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGC                                                                                                     >  1:561932/1‑100          AAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATGTGGCGCGAGCGCCCTATCCGGCATA                                                                                                  <  1:294754/100‑1                  TTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATGTGGCGCGCGCGCCCTATCCGGCATACACAGATC                                                                                          <  2:1487408/100‑1                                   GGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCACGGTATCTTT                                                                          >  1:344092/1‑99                                                                      TGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTA                                      >  2:3379798/1‑100                                                                           ATGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTA                                 >  1:2176534/1‑100                                                                           ATGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTA                                 >  2:2763560/1‑100                                                                           ATGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTA                                 >  2:715476/1‑100                                                                            TGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTAT                                >  1:2637095/1‑100                                                                            TGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTAT                                >  2:2500383/1‑100                                                                            TGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTAT                                >  2:2493429/1‑100                                                                             GCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATT                               >  2:1880402/1‑100                                                                             GCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATT                               >  2:1704772/1‑100                                                                              CCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCCACCTCAAATCACCAAAATAATTTATTTTATTT                              >  2:405763/1‑100                                                                              CCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTT                              <  1:881825/100‑1                                                                              CCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTT                              >  2:850661/1‑100                                                                              CCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATT                               >  2:881827/1‑99                                                                                GGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCA                            >  2:36710/1‑100                                                                                                    ATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAAC        >  2:1333083/1‑100                                                                                                      CCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTG      >  2:168630/1‑100                                                                                                      CCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTG      >  1:2319966/1‑100                                                                                                       CGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGn     <  2:2880659/100‑2                                                                                                       CGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGA     >  1:1849498/1‑100                                                                                                        GGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAG    <  2:2391524/100‑1                                                                                                         GCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGc   <  1:2152552/100‑2                                                                                                         GCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGA   <  1:1729700/100‑1                                                                                                          CATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAA  >  2:908108/1‑100                                                                                                                                                                                                               TATTGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2041257‑2041152 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAA  >  NC_000913/2041182‑2041280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.