New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2041152 =NA (NA)16 (0.140) 10/162 NT NA noncoding (1/34 nt) REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2041182 = NA (NA)noncoding (31/34 nt) REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 179 total aligned reads displayed.

TATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATT  >  NC_000913/2041053‑2041251
                                                                                                   |                                                                                                   
ttctcagttctacttatctatcttattgaaataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatg                                                                                                     >  2:908108‑M1/100‑100 (MQ=255)
tgaacctgcttgcgtaaccggttaaaaagggaacgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTg                                                                                                     >  1:2427764‑M2/39‑100 (MQ=255)
 tctcagttctacttatctatcttattgaaataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGc                                                                                                    <  1:1729700‑M1/2‑1 (MQ=255)
 gaacctgcttgcgtaaccggttaaaaagggaacgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGc                                                                                                    >  1:669438‑M2/38‑100 (MQ=255)
  taAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGcc                                                                                                   >  1:2527977/1‑100 (MQ=255)
   tcagttctacttatctatcttattgaaataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCg                                                                                                  >  1:1849498‑M1/97‑100 (MQ=255)
   aagaagTTGCGTTCCCGTTTTAACCTGTTTCGCAAGCAGGTTCACAACGAATGATCTTTATGACTTCATATTGTTGACAAAGTACGCGTTATCCCTGccc                                                                                                  <  1:577643/100‑2 (MQ=255)
    cagttctacttatctatcttattgaaataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCgg                                                                                                 >  2:168630‑M1/96‑100 (MQ=255)
    agaagTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCgg                                                                                                 >  2:1627785/1‑100 (MQ=255)
     gaagTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGa                                                                                                >  2:569574/1‑100 (MQ=255)
     gaagTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGa                                                                                                <  1:2226930/100‑1 (MQ=255)
      gttctacttatctatcttattgaaataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGAt                                                                                               >  2:1333083‑M1/94‑100 (MQ=255)
      aagTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAt                                                                                               <  1:2651662/100‑1 (MQ=255)
      aagTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAt                                                                                               >  1:2603319/1‑100 (MQ=255)
       agTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAtg                                                                                              >  2:327805/1‑100 (MQ=255)
       agTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAtg                                                                                              >  1:788660/1‑100 (MQ=255)
        gTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAtgt                                                                                             >  1:1972142/1‑100 (MQ=255)
           gcgtaaccggttaaaaagggaacgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGgc                                                                                          >  2:2878083‑M2/28‑100 (MQ=255)
             GTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGgcgc                                                                                        <  2:128877‑M1/100‑1 (MQ=255)
              TTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAGATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGcgcg                                                                                       >  2:1713759‑M1/1‑100 (MQ=255)
              TTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGcgcg                                                                                       >  2:1489913‑M1/1‑100 (MQ=255)
               tCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGa                                                                                      >  2:1517161/1‑100 (MQ=255)
               tCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGa                                                                                      <  1:68825/100‑1 (MQ=255)
                  cTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAgcg                                                                                   <  2:2690229/100‑1 (MQ=255)
                   ttttcAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAgcg                                                                                   <  1:122228/99‑1 (MQ=255)
                     tttAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAACGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGccc                                                                                <  1:1838250/100‑1 (MQ=255)
                     tttAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGccc                                                                                <  1:228976/100‑1 (MQ=255)
                        aaCCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTAt                                                                             >  1:3147314/1‑100 (MQ=255)
                         aCCGGTTACGCAAGCAGGTTCACAACAATATATATGTATAACTTCATATTGCCGAAAAAGTACGTGTTATCCCTTCCGGAtatg                                                                                            >  1:2046369/1‑84 (MQ=255)
                         aCCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATc                                                                            >  1:2661568/1‑100 (MQ=255)
                         aCCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGAGCCCTa                                                                              >  1:1177459/1‑98 (MQ=255)
                            aaataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGATGTGGCGCGAGCGCCCTATCCgg                                                                         >  2:850661‑M1/72‑100 (MQ=255)
                            aaataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGATGTGGCGCGAGCGCCCTATCCgg                                                                         <  1:881825‑M1/29‑1 (MQ=255)
                            aaataaaataaattattttggtgatttgaggtggatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGATGTGGCGCGAGCGCCCTATCCgg                                                                         >  2:405763‑M1/72‑100 (MQ=255)
                             gTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGc                                                                        <  2:2097166/100‑1 (MQ=255)
                             aataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGATGTGGCGCGAGCGCCCTATCCGGc                                                                        >  2:1704772‑M1/71‑100 (MQ=255)
                              ttACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCa                                                                       <  2:1956862/100‑1 (MQ=255)
                              ttACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATAGGGCGCTCGCGCCACATCCGGc                                                                        <  1:2467146/99‑1 (MQ=37)
                              ataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGATGTGGCGCGAGCGCCCTATCCGGCa                                                                       >  2:2500383‑M1/70‑100 (MQ=255)
                               taaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGATGTGGCGCGAGCGCCCTATCCGGCAt                                                                      >  2:715476‑M1/69‑100 (MQ=255)
                               taaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGATGTGGCGCGAGCGCCCTATCCGGCAt                                                                      >  2:2763560‑M1/69‑100 (MQ=255)
                               taaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGATGTGGCGCGAGCGCCCTATCCGGCAt                                                                      >  1:2176534‑M1/69‑100 (MQ=255)
                               tACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCAt                                                                      >  2:717927/1‑100 (MQ=255)
                               tACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCAt                                                                      <  2:1397943/100‑1 (MQ=255)
                                acgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATa                                                                     <  2:319251‑M2/94‑1 (MQ=255)
                                 cgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATac                                                                    <  2:2424436‑M2/95‑1 (MQ=255)
                                 cgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATac                                                                    >  1:1267553‑M2/6‑100 (MQ=255)
                                 cgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATac                                                                    >  2:1180665‑M2/6‑100 (MQ=255)
                                 cgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATac                                                                    <  1:2332064‑M2/95‑1 (MQ=255)
                                   caaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATacac                                                                  >  2:1085257‑M2/4‑100 (MQ=255)
                                   cAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATAGGGCGCTCGCGCCACATCCGGCagggat                                                                  <  1:1018129/100‑6 (MQ=21)
                                    taaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGATGTGGCGCGAGCGCCCTATCCGGCATAcaca                                                                 >  2:3379798‑M1/64‑100 (MQ=255)
                                        aGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATc                                                             <  2:1565166/100‑1 (MQ=255)
                                        aGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGGACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATc                                                             <  1:1048987/100‑1 (MQ=255)
                                         ggTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCg                                                            >  2:100090/1‑100 (MQ=255)
                                            tCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCAt                                                         <  1:342668/100‑1 (MQ=255)
                                              acaacaAATTATCCGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCACTATCCGGCATACACAGATCGCATCa                                                       <  1:1499412/100‑1 (MQ=255)
                                               caacaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAg                                                      >  1:893621/1‑100 (MQ=255)
                                               caacaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAg                                                      <  2:2936806/100‑1 (MQ=255)
                                               caacaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAg                                                      >  2:1791053/1‑100 (MQ=255)
                                               aaacaaATTATCTATATAACTGCCGATTACAGAAACAATACGCCTTATCCCTGCCGAATATCGCGCGAACGCCCTATCCGGCATACACCAATCggacaa                                                       >  1:884869/2‑94 (MQ=255)
                                                aacaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAgg                                                     <  2:1210408/100‑1 (MQ=255)
                                                aacaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAgg                                                     >  2:3068399/1‑100 (MQ=255)
                                                 acaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGt                                                    >  2:2621220/1‑100 (MQ=255)
                                                 acaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGt                                                    >  2:2953500/1‑100 (MQ=255)
                                                       tATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGtt                                              >  1:2494231/1‑100 (MQ=255)
                                                           tGTATAACTTCATATTGCCGACAAAGTACGCGTGATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGt                                          <  2:148723/100‑1 (MQ=255)
                                                            gTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGtt                                         >  2:2648193/1‑100 (MQ=255)
                                                            gTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGtt                                         <  2:2844663/100‑1 (MQ=255)
                                                            gTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGtt                                         <  1:1001328/100‑1 (MQ=255)
                                                              ataACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTg                                       <  2:349364/100‑1 (MQ=255)
                                                              ataACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTg                                       >  1:1891105/1‑100 (MQ=255)
                                                              ataACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTg                                       <  1:3219964/100‑1 (MQ=255)
                                                               taACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGt                                      <  2:425804/100‑1 (MQ=255)
                                                               taACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGt                                      >  1:428667/1‑100 (MQ=255)
                                                               taACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGt                                      >  2:843686/1‑100 (MQ=255)
                                                                 aCTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtca                                    <  1:992274/100‑1 (MQ=255)
                                                                 aCTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtca                                    <  2:2121841/100‑1 (MQ=255)
                                                                  cTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtcat                                   >  1:3087892/1‑100 (MQ=255)
                                                                  cTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtcat                                   >  1:3088760/1‑100 (MQ=255)
                                                                    tCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtcatca                                 <  2:543247/100‑1 (MQ=255)
                                                                     cATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCaa                                <  1:3177967/100‑1 (MQ=255)
                                                                       tatTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAAcc                              <  2:2331162/100‑1 (MQ=255)
                                                                       tatTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAAcc                              <  1:1315209/100‑1 (MQ=255)
                                                                        atTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCt                             >  1:3312545/1‑100 (MQ=255)
                                                                             cGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAAt                        >  1:3030047/1‑100 (MQ=255)
                                                                               aCAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATc                       >  2:524899/1‑99 (MQ=255)
                                                                                cAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCAc                     <  2:3141290/100‑1 (MQ=255)
                                                                                 aaaGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCAcc                    <  2:2577692/100‑1 (MQ=255)
                                                                                       cgcgTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAaatn              <  2:250951/100‑2 (MQ=255)
                                                                                       cgcgTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAaata              >  2:1552845/1‑100 (MQ=255)
                                                                                         cgTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAaataat            <  2:1076262/100‑1 (MQ=255)
                                                                                         cgTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAaataat            <  1:832935/100‑1 (MQ=255)
                                                                                         cgTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAaataat            <  1:2840935/100‑1 (MQ=255)
                                                                                         cgTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAaataat            >  2:2986122/1‑100 (MQ=255)
                                                                                            tATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAattta         >  2:3166184/1‑100 (MQ=255)
                                                                                            tATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAattta         >  2:1883869/1‑100 (MQ=255)
                                                                                                tatGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAAtttatttt     <  1:294754‑M1/97‑1 (MQ=255)
                                                                                                   GCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATttattttatt  >  1:561932‑M1/1‑100 (MQ=255)
                                                                                                   GCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATttattttatt  <  2:2478562‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATT  >  NC_000913/2041053‑2041251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.