New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4295912 =NA (NA)14 (0.120) 4/164 NT NA noncoding (78/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
?NC_000913 4295942 = NA (NA)noncoding (108/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites

Only 100 of 105 total aligned reads displayed.

ATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAG  >  NC_000913/4295813‑4296011
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aTCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGG                                                                                                     >  1:756465‑M1/1‑100 (MQ=255)
aTCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGG                                                                                                     <  2:2543893‑M1/100‑1 (MQ=255)
aTCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGG                                                                                                     <  2:183078‑M1/100‑1 (MQ=255)
 tatccccggcaATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGT                                                                                                    <  1:3093571‑M1/96‑1 (MQ=255)
  ccACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTC                                                                                                   >  2:2495102‑M1/1‑100 (MQ=255)
  ccACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTC                                                                                                   >  1:2977383‑M1/1‑100 (MQ=255)
   cACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCG                                                                                                  <  1:1258774‑M1/100‑1 (MQ=255)
   cACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCG                                                                                                  <  1:2962923‑M1/100‑1 (MQ=255)
   cACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCG                                                                                                  >  2:1337616‑M1/1‑100 (MQ=255)
    aCCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG                                                                                                 <  1:844393‑M1/100‑1 (MQ=255)
    aCCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG                                                                                                 <  2:2055749‑M1/100‑1 (MQ=255)
    aCCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG                                                                                                 <  1:196753‑M1/100‑1 (MQ=255)
     cccGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGA                                                                                                >  2:658365‑M1/1‑100 (MQ=255)
     cccGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGA                                                                                                >  2:1108329‑M1/1‑100 (MQ=255)
     cccGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGA                                                                                                >  2:1247077‑M1/1‑100 (MQ=255)
     cccGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG                                                                                                 <  1:320852‑M1/99‑1 (MQ=255)
     cccGGCAATGTGTGAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG                                                                                                 <  1:1108326‑M1/99‑1 (MQ=255)
      ctgataatgtgtGAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGG                                                                                                 <  1:2962123‑M1/93‑1 (MQ=255)
      ccGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT                                                                                               <  1:199455‑M1/100‑1 (MQ=255)
      ccGGCAATGTGTGAATGCCTGATGCGACGCCTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAT                                                                                               <  2:2156946‑M1/100‑1 (MQ=255)
        ggCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATaa                                                                                             >  1:943761/1‑100 (MQ=255)
        ggCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATaa                                                                                             >  2:2962139/1‑100 (MQ=255)
         gCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATACCCTGATTTAGCGTGATTTTGTAGGTCGGATaa                                                                                             >  2:397629/1‑99 (MQ=255)
          cAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAgg                                                                                           <  2:1621233/100‑1 (MQ=255)
           actgtatgAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAg                                                                                            <  1:2815267/96‑1 (MQ=1)
           aaTGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGc                                                                                          <  2:1271541/100‑1 (MQ=255)
           aaTGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGc                                                                                          <  2:2752166/100‑1 (MQ=255)
            aTGTGTGAATGCCTGATGCGACACTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCg                                                                                         >  1:2729526/1‑100 (MQ=255)
             tgtgtgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGt                                                                                        <  2:229799/100‑1 (MQ=40)
               tgtgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGttt                                                                                      >  2:368684/1‑100 (MQ=38)
               tgtgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGttt                                                                                      >  2:3286909/1‑100 (MQ=38)
               tgtgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGttt                                                                                      >  2:1757773/1‑100 (MQ=38)
               tgtgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGttt                                                                                      >  2:2163640/1‑100 (MQ=38)
               tgtgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGttt                                                                                      >  2:2574720/1‑100 (MQ=38)
                gtgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTa                                                                                     >  1:439296/1‑100 (MQ=35)
                 tgAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAt                                                                                    >  1:1210620/1‑100 (MQ=35)
                 cgtaggcctgataagacgcggcaagcgtcgcatcaggcGTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAt                                                                                    >  1:731022‑M2/39‑100 (MQ=255)
                 cgtaggcctgataagacgcggcaagcgtcgcatcaggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAt                                                                                    >  1:271878‑M2/39‑100 (MQ=255)
                  naaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATg                                                                                   >  2:595249/2‑100 (MQ=17)
                  gtaggcctgataagacgcgttaagcgtcgcatcaggcGTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTttacg                                                                                   >  1:290614‑M2/38‑98 (MQ=255)
                  gAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATg                                                                                   >  2:514583/1‑100 (MQ=33)
                  gAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATg                                                                                   >  2:57795/1‑100 (MQ=33)
                   aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGTTTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGc                                                                                  <  2:1408988/100‑1 (MQ=12)
                   aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGc                                                                                  <  1:12727/100‑1 (MQ=32)
                   aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGc                                                                                  <  2:1207023/100‑1 (MQ=32)
                   aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGc                                                                                  >  1:1785659/1‑100 (MQ=32)
                     tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGccn                                                                                <  2:1483450/100‑2 (MQ=11)
                     tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCg                                                                                >  2:162473/1‑100 (MQ=11)
                     tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCg                                                                                <  2:2245738/100‑1 (MQ=11)
                      gcctgataagacgcggcaagcgtcgcatcaggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCg                                                                                >  1:1432558‑M2/34‑99 (MQ=255)
                       cctgataagacgcggcaagcgtcttatcaggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCa                                                                              >  2:1240729‑M2/33‑100 (MQ=255)
                         tgataagacgcgtcaagcgtcttatcaggcCTACGCCATACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATc                                                                            >  1:2108734‑M2/31‑100 (MQ=255)
                          gataagacgcgttaagcgtcgcatcaggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGcatgc                                                                           >  1:2071139‑M2/30‑98 (MQ=255)
                          gataagacgcggcaagcgtcttatcaggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTAGGATAAGGCGTTTATGCCGCATc                                                                            >  1:2887124‑M2/30‑99 (MQ=255)
                          gATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATgcggcataaacgccttatcc                                                                           <  2:2916542‑M1/100‑21 (MQ=255)
                           ataagacgcgttaagcgtcgcatcaggcGTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCCTCCg                                                                          >  1:2088042‑M2/29‑100 (MQ=255)
                             gCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATgcggcgtaaacgccttatccgac                                                                        <  2:2622071‑M1/100‑24 (MQ=255)
                              cGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATgcggcataaacgccttatccgacc                                                                       <  2:632268‑M1/100‑25 (MQ=255)
                              cGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATgcggcataaacgccttatccgacc                                                                       <  2:3307989‑M1/100‑25 (MQ=255)
                              cGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATgcggcataaacgccttatccgacc                                                                       <  1:175936‑M1/100‑25 (MQ=255)
                              cGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTATGTCGGATgcggcgtaaacgccttatccgacc                                                                       <  2:249248‑M1/100‑25 (MQ=255)
                              cGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATgcggcgtaaacgccttatccgacc                                                                       <  2:2636370‑M1/100‑25 (MQ=255)
                              cGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATgcggcgtaaacgccttatccgacc                                                                       <  2:3063840‑M1/100‑25 (MQ=255)
                               gACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATgcggcataaacgccttatccgacct                                                                      <  1:1929498‑M1/100‑26 (MQ=255)
                                aCGCCTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATgcggcataaacgccttatccgaccta                                                                     <  1:2541827‑M1/100‑27 (MQ=255)
                                   cggcaagcgtcgcatcaggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAAc                                                                  >  2:1065700‑M2/21‑100 (MQ=255)
                                         gcgTCTTATCAGGCCTTCGCCAGACCGCGCAATAGCCTGCTTTAGCCTGATTTTGTAGATCAGATgcggcgtaaacgccttatccgacctacaaaatcac                                                            <  1:2725967‑M1/100‑36 (MQ=255)
                                               catcaggcGTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGa                                                       >  1:2622055‑M2/9‑99 (MQ=255)
                                                 tcaggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGc                                                    >  2:1208703‑M2/7‑100 (MQ=255)
                                                 tcaggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGc                                                    >  2:3048338‑M2/7‑100 (MQ=255)
                                                 tcaggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGc                                                    <  1:292219‑M2/94‑1 (MQ=255)
                                                  caggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCt                                                   >  2:2578368‑M2/6‑100 (MQ=255)
                                                  caggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCt                                                   <  2:672074‑M2/95‑1 (MQ=255)
                                                   aggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGc                                                         >  1:398796‑M2/5‑93 (MQ=255)
                                                   aggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCtt                                                  >  1:2875768‑M2/5‑100 (MQ=255)
                                                    ggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATGAACGCCTGATGCGAGGCtt                                                  >  1:3157307‑M2/4‑99 (MQ=255)
                                                    ggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCtt                                                  >  2:31366‑M2/4‑99 (MQ=255)
                                                    ggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTa                                                 >  1:1253374‑M2/4‑100 (MQ=255)
                                                    ggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTa                                                 >  1:3412741‑M2/4‑100 (MQ=255)
                                                     gcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGTGCCgcttca                                                >  2:2810512‑M2/3‑98 (MQ=255)
                                                     gcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa                                                >  2:2541840‑M2/3‑100 (MQ=255)
                                                     gcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa                                                >  2:3320539‑M2/3‑100 (MQ=255)
                                                      cCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAc                                               >  2:3308186‑M2/2‑100 (MQ=255)
                                                              atacaGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATgcggcataaacgccttatccgacctacaaaatcacgctaaatcaggctattgcgc                                        <  2:2551155‑M1/97‑56 (MQ=255)
                                                              aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTA                                       <  2:277975‑M2/100‑1 (MQ=255)
                                                               gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTAT                                      <  1:1470088‑M2/100‑1 (MQ=255)
                                                                 cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTTACGCGTCGTATCA                                    <  2:2987130‑M2/100‑1 (MQ=255)
                                                                 cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCA                                    <  1:2660845‑M2/100‑1 (MQ=255)
                                                                 cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCA                                    >  1:1925084‑M2/1‑100 (MQ=255)
                                                                 cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATC                                     <  1:798941‑M2/99‑1 (MQ=255)
                                                                 cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATCCCGCATCCGACATCAACGCATGATGCGACGCTTAACGCGTCTTATCA                                    <  2:235927‑M2/100‑1 (MQ=255)
                                                                   gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTACCGCGTCTTATCAGG                                  <  1:532035‑M2/100‑1 (MQ=255)
                                                                   gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGG                                  <  2:458887‑M2/100‑1 (MQ=255)
                                                                   gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCA                                    >  1:455045‑M2/1‑98 (MQ=255)
                                                                    cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGC                                 >  1:3286889‑M2/1‑100 (MQ=255)
                                                                           gCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTGACGCGTCTTATCAGGC                                 <  1:2060201‑M2/93‑1 (MQ=255)
                                                                                                   gTCGGATgcggcatacacgccttatccgacctacaaaatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcggcaagcgtcgc  <  2:3368832‑M1/100‑94 (MQ=255)
                                                                                                   gTCGGATgcggcataaacgccttatccgacctacaaaatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcggcatgcgtcgc  <  2:1799966‑M1/100‑94 (MQ=255)
                                                                                                   gTCGGATgcggcataaacgccttatccgacctacaaaatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcggcaagcgtcgc  <  2:1221625‑M1/100‑94 (MQ=255)
                                                                                                   gTCGGATgcggcataaacgccttatccgacctacaaaatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcggcaagcgtcgc  >  1:836540‑M1/1‑7 (MQ=255)
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ATCCACCCGGCAATGTGTGAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAG  >  NC_000913/4295813‑4296011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.