| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4295912 = | NA (NA) | 14 (0.120) | 4/164 | NT | NA | noncoding (78/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4295942 = | NA (NA) | noncoding (108/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
CTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTA > NC_000913/4295848‑4296041 | cggcaagcgtcgcatcaggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAAc > 2:1065700‑M2/21‑100 (MQ=255) catcaggcGTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGa > 1:2622055‑M2/9‑99 (MQ=255) tcaggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGc > 2:1208703‑M2/7‑100 (MQ=255) tcaggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGc > 2:3048338‑M2/7‑100 (MQ=255) tcaggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGc < 1:292219‑M2/94‑1 (MQ=255) caggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCt > 2:2578368‑M2/6‑100 (MQ=255) caggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCt < 2:672074‑M2/95‑1 (MQ=255) aggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGc > 1:398796‑M2/5‑93 (MQ=255) aggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCtt > 1:2875768‑M2/5‑100 (MQ=255) ggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATGAACGCCTGATGCGAGGCtt > 1:3157307‑M2/4‑99 (MQ=255) ggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCtt > 2:31366‑M2/4‑99 (MQ=255) ggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTa > 1:1253374‑M2/4‑100 (MQ=255) ggcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTa > 1:3412741‑M2/4‑100 (MQ=255) gcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGTGCCgcttca > 2:2810512‑M2/3‑98 (MQ=255) gcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa > 2:3320539‑M2/3‑100 (MQ=255) gcCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa > 2:2541840‑M2/3‑100 (MQ=255) cCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAc > 2:3308186‑M2/2‑100 (MQ=255) aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTA < 2:277975‑M2/100‑1 (MQ=255) gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTAT < 1:1470088‑M2/100‑1 (MQ=255) cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTTACGCGTCGTATCA < 2:2987130‑M2/100‑1 (MQ=255) cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCA < 1:2660845‑M2/100‑1 (MQ=255) cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCA > 1:1925084‑M2/1‑100 (MQ=255) cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATC < 1:798941‑M2/99‑1 (MQ=255) cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATCCCGCATCCGACATCAACGCATGATGCGACGCTTAACGCGTCTTATCA < 2:235927‑M2/100‑1 (MQ=255) aGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCA > 2:895475‑M2/1‑99 (MQ=255) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTACCGCGTCTTATCAGG < 1:532035‑M2/100‑1 (MQ=255) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGG > 1:2674214‑M2/1‑100 (MQ=255) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGG < 2:458887‑M2/100‑1 (MQ=255) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCA > 1:455045‑M2/1‑98 (MQ=255) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGC > 1:3286889‑M2/1‑100 (MQ=255) gCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTGACGCGTCTTATCAGGC < 1:2060201‑M2/93‑1 (MQ=255) tGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCgttgatgtcggatgcggcataaacgccttatccgacctacaaaatcac < 2:536280‑M2/100‑49 (MQ=255) tCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCgttgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaat < 2:464175‑M2/100‑56 (MQ=255) ccGACATGAACACCTGATGCGACGCTTGCCGCGTCTTATCAGGCgttgatgtcggatgcggcgtagacgccttatccgacctacaaaatcacgctaaatc < 1:1799958‑M2/100‑57 (MQ=255) cGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCattgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatca < 2:2784425‑M2/100‑58 (MQ=255) cGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCgttgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatca < 1:1247073‑M2/100‑58 (MQ=255) cGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCgttgatgtcggatgcggcataaacgccttatccgacctacaaaatcacgctaaatca < 2:1657987‑M2/100‑58 (MQ=255) cATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCattgatgtcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatcaggc < 2:130959‑M2/100‑61 (MQ=255) cATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCgttgatgtcggatgcggcataaacgccttatccgacctacaaaatcacgctaaatcaggc < 2:2977399‑M2/100‑61 (MQ=255) aTCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCgttgatgtcggatgcggcataaacgccttatccgacctacaaaatcacgctaaatcaggct < 2:1400246‑M2/100‑62 (MQ=255) | CTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTA > NC_000913/4295848‑4296041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |