New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2808135 =NA (NA)7 (0.060) 4/164 NT NA noncoding (5/84 nt) REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 2808165 = NA (NA)noncoding (35/84 nt) REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 155 total aligned reads displayed.

AAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAA  >  NC_000913/2808066‑2808264
                                                                                                   |                                                                                                   
gaaatgtgcgatgtggtttgtaggcatgataagacgcgccagcgtcgcatcaggcattgtgcacagaacGGCGGATAAGGCGTTTTTGCCGCATccgccg                                                                                                     >  1:1463871‑M1/70‑100 (MQ=255)
aaGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATccgccg                                                                                                     <  2:1921252/100‑1 (MQ=255)
aaGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATccgccg                                                                                                     >  2:3281064/1‑100 (MQ=255)
 aaatgtgcgatgtggtttgtaggcatgataagacgcgccagcgtcgcatcaggcattgtgcacagaacGGCGGATAAGGCGTTTTTGCCGCATCCGCCGt                                                                                                    >  1:445800‑M1/69‑100 (MQ=255)
 aaatgtgcgatgtggtttgtaggcatgataagacgcgccagcgtcgcatcaggcattgtgcacagaacGGCGGATAAGGCGTTTTTGCCGCATCCGCCGt                                                                                                    >  1:2517016‑M1/69‑100 (MQ=255)
 aGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGt                                                                                                    >  1:2443514/1‑100 (MQ=255)
 aGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGt                                                                                                    >  1:2411083/1‑100 (MQ=255)
 aGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGt                                                                                                    <  1:2333147/100‑1 (MQ=255)
 aGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGCATAAGGCGTTTTTGCCGCATCCGCCGt                                                                                                    <  1:3369439/100‑1 (MQ=255)
 aGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGAAATTTTTATTCGGGCGGATAAGGCGTCTTTGCCGCATCCGCCGt                                                                                                    >  2:1890660/1‑100 (MQ=255)
   cccACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTc                                                                                                  >  2:308403/1‑100 (MQ=255)
   cccACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTc                                                                                                  >  2:329780/1‑100 (MQ=255)
     caccaGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGtt                                                                                                   <  1:2224727/97‑1 (MQ=255)
       ccaGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCtgtg                                                                                              <  2:618656/100‑1 (MQ=255)
        cagcagcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTAGTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGc                                                                                             <  1:474199/100‑1 (MQ=255)
         agcagcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGca                                                                                            >  1:814608/1‑100 (MQ=255)
         agcagcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGca                                                                                            <  2:162848/100‑1 (MQ=255)
               agTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGc                                                                                      <  2:3263502/100‑1 (MQ=255)
                gTTCGATGGCTGGGTGAATGAGGCACTGGCAGCGCAGAAGAAATTGTTATTCGGGCGGAAAAGGCGTTTTTGACGCATCCGCCGTTCTGTGCACAATGcc                                                                                     >  1:3402981/1‑100 (MQ=255)
                   cGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGa                                                                                  <  1:71546/100‑1 (MQ=255)
                   cGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGa                                                                                  >  1:779496/1‑100 (MQ=255)
                   cGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGa                                                                                  >  1:1563330/1‑100 (MQ=255)
                      tGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGc                                                                               <  2:785500/100‑1 (MQ=255)
                      tGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGc                                                                               <  2:3287756/100‑1 (MQ=255)
                         cTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGAc                                                                            <  1:432259/100‑1 (MQ=255)
                          tGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACg                                                                           >  2:2659612/1‑100 (MQ=255)
                            ggTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCt                                                                         <  1:1273141/100‑1 (MQ=255)
                             gTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTg                                                                        >  2:1038409/1‑100 (MQ=255)
                                 cttctgcgcTGCCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGgcgc                                                                    >  2:1416524/6‑100 (MQ=255)
                                 aTGCGGCGCTGGACGCGCAGAAGTAACTTTCCTTCGCGCGGATCAGGCGTTTCTGCCGCCTCCGCAGTTCTCTGCACAATGCCTGATGCGACGCTGgcg                                                                     <  1:281812/99‑1 (MQ=21)
                                 aTGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGgcgc                                                                    >  2:813992/1‑100 (MQ=255)
                                 aTGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGgcgc                                                                    >  2:148372/1‑100 (MQ=255)
                                  tgaatcgcTGGCAGCGCCGAAGTACTTTTTATTCGTGTGGATAAGGCGTATTTACCGCATCCGCCGTTCTGTGCACAGTGCCTGCTGCGACg                                                                           >  1:1476791/6‑92 (MQ=255)
                                   gAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGgcg                                                                     >  1:485142/1‑97 (MQ=255)
                                     ggCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGGGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCt                                                                <  1:303207/100‑1 (MQ=255)
                                     ggCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCt                                                                <  1:2726208/100‑1 (MQ=255)
                                       cgcTGGCAGCGCAGAAGTAATATATATACAGACGGATAAGGCGTTTATGCCGCATACACCGTTCTGTGCACAATGCCTGATGCAACGCTGACGCGTCtt                                                               >  1:3213848/1‑99 (MQ=21)
                                        gcTGGCAGCGCAGAAGTAATTTTTAGTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTa                                                              <  1:671427/99‑1 (MQ=255)
                                         cTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATc                                                            <  1:1038406/100‑1 (MQ=255)
                                          tGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCa                                                           <  1:355736/100‑1 (MQ=255)
                                          tGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCa                                                           <  1:3028683/100‑1 (MQ=255)
                                          tGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCa                                                           <  2:431878/100‑1 (MQ=255)
                                          tGGCAGCGCAGAAGTAATTTTTATTCGGGAGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCa                                                           <  2:1253930/100‑1 (MQ=255)
                                           ggCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCAt                                                          <  2:276719/100‑1 (MQ=255)
                                            gCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATg                                                         <  2:1735147/100‑1 (MQ=255)
                                             cAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGc                                                        >  2:1744154/1‑100 (MQ=255)
                                                cgcAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTa                                                     >  1:3058659/1‑100 (MQ=255)
                                                 gcAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTAc                                                    >  2:508810/1‑100 (MQ=255)
                                                 gcAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTAc                                                    <  2:424376/100‑1 (MQ=255)
                                                 gcAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTAc                                                    <  2:2747180/100‑1 (MQ=255)
                                                  cAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATgagatcg                                                   >  2:2585697/1‑94 (MQ=255)
                                                     aaGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAAc                                                >  1:925704/1‑100 (MQ=255)
                                                      aGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAAcc                                               >  2:1196347/1‑100 (MQ=255)
                                                       gTAATTTTTATTCGGGCGGATAAGGCGATTTTGCCGAATATGACTTTCTGTGCACAATGCCTAATGCGACTATGGCGCGTCTTATCATACCTACTAATca                                              >  1:933255/1‑100 (MQ=25)
                                                        tAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACcac                                             <  2:2816269/100‑1 (MQ=255)
                                                           tttttATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATc                                          >  1:1376693/1‑100 (MQ=255)
                                                               tATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcac                                      <  1:1196343/100‑1 (MQ=255)
                                                               tATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcac                                      <  1:1007848/100‑1 (MQ=255)
                                                               tATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcac                                      <  1:3077738/100‑1 (MQ=255)
                                                                aTTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcaca                                     >  1:3310337/1‑100 (MQ=255)
                                                                 gaacggcggatgcggcaaaaacgccttatccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAt                                    >  1:1429965‑M2/35‑100 (MQ=255)
                                                                   ngggCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                  >  1:1580072/2‑100 (MQ=255)
                                                                   cGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                  >  1:2605630/1‑100 (MQ=255)
                                                                   acggcggatgcggcaaaaacgccttatccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                  >  1:445793‑M2/33‑100 (MQ=255)
                                                                   acggcggatgcggcaaaaacgccttatccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                  >  2:3294248‑M2/33‑100 (MQ=255)
                                                                   acggcggatgcggcaaaaacgccttatccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                  >  1:2517016‑M2/33‑100 (MQ=255)
                                                                    gggCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTc                                 >  2:385840/1‑100 (MQ=255)
                                                                    gggCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTc                                 >  1:2244336/1‑100 (MQ=255)
                                                                    gggCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTc                                 <  1:1941963/100‑1 (MQ=255)
                                                                    gggCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTc                                 >  1:263570/1‑100 (MQ=255)
                                                                     GGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTca                                >  1:1927723‑M1/1‑100 (MQ=255)
                                                                      gcggatgcggcaaaaacgccttatccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaa                               >  2:482181‑M2/30‑100 (MQ=255)
                                                                      GCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaa                               >  2:3396650‑M1/1‑100 (MQ=255)
                                                                       nGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATttcagc                              <  1:2069861‑M1/99‑3 (MQ=255)
                                                                        GGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaaca                             >  2:1603060‑M1/1‑100 (MQ=255)
                                                                           TAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATc                          >  2:26309‑M1/1‑100 (MQ=255)
                                                                           TAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATc                          >  2:2058160‑M1/1‑100 (MQ=255)
                                                                            aaGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatct                         <  1:843575/100‑1 (MQ=255)
                                                                             aGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatcta                        <  1:148371/100‑1 (MQ=255)
                                                                             aGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatcta                        >  1:2537123/1‑100 (MQ=255)
                                                                              ggCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctat                       >  2:1900909/1‑100 (MQ=255)
                                                                                 gattttGGCGCATAAGCCGTTCTGTGCAACATTCCTGAAACACAGCTGGCGCGTCTTAACATGCATACAATCTATGTCACTTATTTCCACAatcgatctc                    <  1:2076645/98‑2 (MQ=255)
                                                                                     ttGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAAACACATCGCACATTTCAACAATCTATCTTTCAt                <  2:3237468/100‑1 (MQ=255)
                                                                                      tGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATc               <  2:3058675/100‑1 (MQ=255)
                                                                                       gCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATcc              >  2:2184779/1‑100 (MQ=255)
                                                                                       gCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATcc              <  2:2474106/100‑1 (MQ=255)
                                                                                       gCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATcc              <  2:265788/100‑1 (MQ=255)
                                                                                       gCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATcc              >  2:1044254/1‑100 (MQ=255)
                                                                                       gCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATcc              >  2:61089/1‑100 (MQ=255)
                                                                                        ccGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATccc             >  2:1148621/1‑100 (MQ=255)
                                                                                        ccGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATccc             >  2:1145863/1‑100 (MQ=255)
                                                                                         cGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCa            <  1:3281044/100‑1 (MQ=255)
                                                                                         cGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCa            >  2:2346777/1‑100 (MQ=255)
                                                                                             tccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATAtt        >  2:715650‑M2/7‑100 (MQ=255)
                                                                                               cgccGTTCTGTGAAGAATGACTGATTCGACTCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTTAACAATCTATCTTTCATCCCATATtc       <  1:2957121‑M2/95‑1 (MQ=255)
                                                                                                gccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtcat     >  2:1360443‑M2/4‑100 (MQ=255)
                                                                                                 ccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtcatc    <  1:2563962‑M2/98‑1 (MQ=255)
                                                                                                  cGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtcatca   <  2:3343052‑M2/99‑1 (MQ=255)
                                                                                                   gTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCaa  >  1:1394061/1‑100 (MQ=255)
                                                                                                   gTTCTGTGCACAATCCCTGATGCGACTCTTTCTCGTCTTATCATGCCTACAAACCACATCTCACATTTCAACAATCTATCTTTCATCCCATATtcatca   <  1:1602480/99‑1 (MQ=37)
                                                                                                   |                                                                                                   
AAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAA  >  NC_000913/2808066‑2808264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.