New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2232735	NA (NA)	8 (0.060)	7/166	NT	NA	intergenic (+7/‑143)	cdd/sanA	cytidine/deoxycytidine deaminase/DUF218 superfamily vancomycin high temperature exclusion protein
	?	NC_000913	= 2232765	NA (NA)					noncoding (30/34 nt)	REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences

AAGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2232637‑2232735 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCC  <  NC_000913/2232765‑2232662                                                                                                                                                                                                             AAGCCTATGCGGCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTTTCGGCTGTCACAGTATCGAGCGAGGGCTTCCCGCTTAAGCCAGGTG                                                                                                         <  1:1749082/100‑1  AGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGC                                                                                                        >  1:1810953/1‑100  AGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGC                                                                                                        >  1:2407842/1‑100   GCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCC                                                                                                       >  2:3748390/1‑100    CCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCG                                                                                                      <  2:1470115/100‑1    CCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCG                                                                                                      >  2:1008770/1‑100     CGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGG                                                                                                     <  1:1632372/100‑1     CGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGG                                                                                                     <  1:3072577/100‑1      GATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGA                                                                                                    <  2:1684455/100‑1      GATGCGCCGTTCAGTCGGTGGGATGCCACCTCCGCAACGCTGAAAGCTGTCGGCAGTCAAAGTATCGACCGAGTGCGTCTCGCTTAAGCCTGGTGCCGGA                                                                                                    <  1:3368613/100‑1                     CAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCC                                                                                     >  2:2107598/1‑100                              GCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATCCGGC                                                                            <  1:1831128/100‑1                               CCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATCCGGCA                                                                           <  1:447471/100‑1                               CCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATCCGGCA                                                                           <  2:3630485/100‑1                                CACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTAGCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATCCGGCAC                                                                          <  1:2107582/100‑1                                 ACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATCCGGCACC                                                                         <  1:2453091/100‑1                                   CTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATCCGGCACCAG                                                                       <  2:2565687/100‑1                                    TCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGG                                                                      <  1:3807645/100‑1                                                                                                    GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGC      >  2:1731254/1‑100                                                                                                    GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGC      >  2:2163939/1‑100                                                                                                    GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGC      >  2:2820670/1‑100                                                                                                      CGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCAT    <  2:3640169/100‑1                                                                                                        GACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTATGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATC   >  2:101406/1‑99                                                                                                        GACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCC  >  1:3469593/1‑100                                                                                                        GACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCC  >  1:3195630/1‑100                                                                                                        GACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCC  <  1:2485911/100‑1                                                                                                                                                                                                             AAGCCGATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2232637‑2232735 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCC  <  NC_000913/2232765‑2232662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.