New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4359852 =152 (1.100)31 (0.220) 24/178 NT 17.4% coding (180/1335 nt) cadB putative lysine/cadaverine transporter
?NC_000913 = 4375338 143 (1.030)coding (320/1029 nt) epmB EF‑P‑Lys34 lysylation protein; weak lysine 2,3‑aminomutase

TTACCTGCGAACCTAGCAAGTATCGGTGGTATTGCTATCTGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4359950‑4359852
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTCCGTCGTCACTTCCCCTATGCCGAAAATCAGGGC  <  NC_000913/4375338‑4375241
                                                                                                                                                                                                     
TTACCTGCGAACCTAGCAAGTATCGGTGGTATTGCTATCTGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGA                                                                                                   >  1:123642/1‑100
       CGAACCTAGCAAGTATCGGTGGTATTGCTATCTGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCAC                                                                                            <  1:706138/100‑1
       CGAACCTAGCAAGTATCGGTGGTATTGCTATCTGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCAC                                                                                            >  1:3813359/1‑100
          ACCTAGCAAGTATCGGTGGTATTGCTATCTGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAAC                                                                                         <  2:1350008/100‑1
              AGCAAGTATCGGTGGTATTGCTATCTGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGG                                                                                     >  1:1456880/1‑100
                        GGTGGTATTGCTATCTGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCT                                                                           >  2:568974/1‑100
                        GGTGGTATTGCTATCTGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCT                                                                           >  2:54686/1‑100
                          TGGTATTGCTATCTGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGG                                                                         <  1:2883509/100‑1
                          TGGTATTGCTATCTGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGG                                                                         <  2:123645/100‑1
                             TATTGCTATCTGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCA                                                                      <  1:2262094/100‑1
                             TATTGCTATCTGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCA                                                                      <  1:1971024/100‑1
                                      CTGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCT                                                             >  1:3808349/1‑100
                                       TGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTG                                                            >  2:3322763/1‑100
                                          GGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGC                                                         >  2:2722535/1‑100
                                            TTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGG                                                       <  2:3201457/100‑1
                                            TTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGG                                                       <  1:182898/100‑1
                                              GGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGn                                                       <  1:2968089/98‑2
                                                      TCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCG                                             <  2:1117742/100‑1
                                                       CTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGC                                            <  1:54685/100‑1
                                                       CTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGC                                            <  2:426110/100‑1
                                                        TATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCT                                           >  2:1760714/1‑100
                                                               GGTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTT                                    >  2:2657349/1‑100
                                                                GTGCAATGTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTC                                   <  2:2979985/100‑1
                                                                       GTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTCCGTCGTC                            <  2:989119/100‑1
                                                                       GTCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTCCGTCGTC                            <  1:2657328/100‑1
                                                                        TCGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTCCGTCGTCA                           <  1:568967/100‑1
                                                                         CGCTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTCCGTCGTCAC                          <  1:771285/100‑1
                                                                           CTGGCGTATGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTCCGTCGTCACTT                        >  1:2000524/1‑100
                                                                                 tcTGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTCCGTCGTCACTTC                       <  1:317571/93‑1
                                                                                   TGTATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTCCGTCGTCACTTCCCCTATG                >  2:3317959/1‑100
                                                                                     TATATGCCCGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTCCGTCGTCACTTCCCCTATGCC              >  1:2288017/1‑100
                                                                                             CGACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGGGCGGTAAATTGCCGCTATTGCTTCCGTCGTCACTTCCCCTATGCCGAAAATCA      >  1:2144897/1‑100
                                                                                               ACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTCCGTCGTCACTTCCCCTATGCCGAAAATCAGG    <  1:3196620/100‑1
                                                                                               ACTGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTCCGTCGTCACTTCCCCTATGCCGAAAATCAGG    <  1:3080822/100‑1
                                                                                                 TGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTCCGTCGTCACTTCCCCTATGCCGAAAATCAGGGC  <  2:3191970/100‑1
                                                                                                 TGAATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTCCGTCGTCACTTCCCCTATGCCGAAAATCAGGG   <  1:80374/99‑1
                                                                                                                                                                                                     
TTACCTGCGAACCTAGCAAGTATCGGTGGTATTGCTATCTGGGGTTGGATTATCTCTATTATTGGTGCAATGTCGCTGGCGTATGTATATGCCCGACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4359950‑4359852
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATACCACAACCGGGCGCTTTTGCTGGTCAAAGGCGGCTGCGCGGTAAATTGCCGCTATTGCTTCCGTCGTCACTTCCCCTATGCCGAAAATCAGGGC  <  NC_000913/4375338‑4375241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.