| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4515778 | 135 (0.980) | 9 (0.070) | 6/166 | NT | 6.4% | coding (900/2325 nt) | fecA | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| ? | NC_000913 | = 4515794 | 139 (1.080) | coding (884/2325 nt) | fecA | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
CAGCAGGCTGTTGAAGGTGTGCACCTCATCCGGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4515676‑4515778‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgcTGCTCTACTCCGGCACGCGCGGCAGTGACTG‑‑GCGCGAGCACAGCGCCACCCGCATCGACGACCTGATGCTGAAAAGCAAATATGCGCCGGATGAGGTGC < NC_000913/4515794‑4515696 CAGCAGGCTGTTGAAGGTGTGCACCTCATCCGGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCCGTCACTGCCG > 2:1308614/1‑100CAGCAGGCTGTTGAAGGTGTGCACCTCATCCGGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCG > 1:1949294/1‑100CAGCAGGCTGTTGAAGGTGTGCACCTCATCCGGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCG > 2:2454684/1‑100 GCAGGCTGTTGAAGGTGTGCACCTCATCCGGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCGCG > 1:2580602/1‑100 GCAGGCTGTTGAAGGTGTGCACCTCATCCGGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCGCG < 2:594095/100‑1 CAGGCTGTTGAAGGTGTGCACCTCATCCGGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGC < 1:149721/95‑1 GCTGTTGAAGGTGTGCACCTCATCCGGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGCTGC > 2:3769105/1‑100 GTGTGCACCTCATCCGGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGCTGCTCTACTCCGG < 1:3769079/100‑1 CTCATCCGGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGCTGCTCTACTCCGGCACGCGCG < 1:108096/100‑1 gatctGGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGCTGCTCTACTCCGGCACGCGCGGC < 2:396779/95‑1 CATCCGGCGCATATTTGTTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGCTGCTCTACTCCGGCACGCGCGGC < 2:290225/100‑1 CATCCGGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGCTGCTCTACTCCGGCACGCGCGGC < 2:1383569/100‑1 TCCTGCGCATATTTGCTTTTCAGCAGCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGCTGCTCTACTCCGGCACGCGCGGCAG < 1:3248955/100‑1 TCCGGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGCTGCTCTACTCCGGCACGCGCGGCAG < 2:1674455/100‑1 CCGGCGCATATTTGCTTTTCAGCATCAGGCCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGCTGCTCTACCCCGGCACGCGCGGCAGT < 1:951277/100‑1 GGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGCTGCTCTACTCCGGCACGCGCGGCAGatc > 1:396773/1‑97 CGCGCTGCTCTACTCCGGCACGCGCGGCAGTGACTG‑‑GCGCGAGCACAGCGCCACCCGCATCGACGACCTGATGCTGAAAAGCAAATATGCGCCGGATGAG > 1:132357/1‑100 CGCGCTGCTCTACTCCGGCACGCGCGGCAGTGACTG‑‑GCGCGAGCACAGCGCCACCCGCATCGACGACCTGATGCTGAAAAGCAAATATGCGCCGGATGAG > 2:215100/1‑100 CGCGCTGCTCTACTCCGGCACGCGCGGCAGTGACTG‑‑GCGCGAGCACAGCGCCACCCGCATCGACGACCTGATGCTGAAAAGCAAATATGCGCCGGATGAG > 1:3774032/1‑100 CGCTGCTCTACCCCGGCACGCGCGGCAGTGACTG‑‑GCGCGAGCACAGCGCCACCCGCATCGACGACCTGATGCTGAAAAGCAAATATGCGCCGGATGAGGT < 1:3382501/100‑1 GCTGCTCTACTCCGGCACGCGCGGCAGTGACTG‑‑GCGCGAGCACAGCGCCACCCGCATCGACGACCTGATGCTGAAAAGCAAATATGCGCCGGATGAGGTG < 1:2745171/100‑1 CTGCTCTACTCCGGCACGCGCGGCAGTGACTG‑‑GCGCGAGCACAGCGCTACCCGCATCGACGACCTGATGCTGAAAAGCAAATATGCGCCGGATGAGGTGC < 1:596426/100‑1 CTGCTCTACTCCGGCACGCGCGGCAGTGACTG‑‑GCGCGAGCACAGCGCCACCCGCATCGACGACCTGATGCTGAAAAGCAAATATGCGCCGGATGAGGTGC < 1:596869/100‑1 CTGCTCTACTCCGGCACGCGCGCCAGTCACTGCCGCGCGTGCACAGCGCCACCCGCATCGACGACCTGATGCTGAAAAGCAAATATGCGCCGGATGAGGT > 2:2064080/1‑100 CAGCAGGCTGTTGAAGGTGTGCACCTCATCCGGCGCATATTTGCTTTTCAGCATCAGGTCGTCGATGCGGGTGGCGCTGTGCTCGCGCCAGTCACTGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4515676‑4515778‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgcTGCTCTACTCCGGCACGCGCGGCAGTGACTG‑‑GCGCGAGCACAGCGCCACCCGCATCGACGACCTGATGCTGAAAAGCAAATATGCGCCGGATGAGGTGC < NC_000913/4515794‑4515696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |