New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 279841	NA (NA)	17 (0.130)	7/168	NT	NA	noncoding (90/768 nt)	IS1	repeat region
	?	NC_000913	= 279852	NA (NA)					noncoding (79/768 nt)	IS1	repeat region

AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACA  >  NC_000913/279834‑279939        |                                                                                                   aGTAGCTGCACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgag        <  1:1433176/100‑1 (MQ=11) aGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgag        >  2:1352881/1‑100 (MQ=11) aGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCAACTAAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgag        <  1:184700/100‑1 (MQ=2) aGTAGCTGAACAGGAGGCACAGCTGATAGAATCAGAAGTCACTTGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGCCAGCATCACCgag        <  1:1096554/100‑1 (MQ=11)  gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga       <  1:269647/100‑1 (MQ=31)  gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga       <  2:3607805/100‑1 (MQ=31)    aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAac     <  1:335735/100‑1 (MQ=33)     gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca    <  1:2136854/100‑1 (MQ=25)     gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca    <  2:1302081/100‑1 (MQ=35)      cTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGATCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAacac   <  1:660261/100‑1 (MQ=25)      cTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAacac   >  1:2403505/1‑100 (MQ=35)      cTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAacac   >  2:2382107/1‑100 (MQ=35)      cTGAACAGGAGAGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACAATAAATCAGTAAGTTGGCAGCATCACCGAGAacac   >  1:2030691/1‑100 (MQ=255)       tGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAAcaca  >  1:184789/1‑100 (MQ=38)       tGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAAcaca  >  2:613488/1‑100 (MQ=38)        gAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAAcaca  <  2:3159707/99‑1 (MQ=38)        |                                                                                                   AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACA  >  NC_000913/279834‑279939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.