New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 279841	NA (NA)	17 (0.130)	7/168	NT	NA	noncoding (90/768 nt)	IS1	repeat region
	?	NC_000913	= 279852	NA (NA)					noncoding (79/768 nt)	IS1	repeat region

AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAATT  >  NC_000913/279834‑279951                   |                                                                                                    aGTAGCTGCACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgag                    <  1:1433176/100‑1 (MQ=11) aGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgag                    >  2:1352881/1‑100 (MQ=11) aGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCAACTAAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgag                    <  1:184700/100‑1 (MQ=2) aGTAGCTGAACAGGAGGCACAGCTGATAGAATCAGAAGTCACTTGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGCCAGCATCACCgag                    <  1:1096554/100‑1 (MQ=11)  gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga                   <  1:269647/100‑1 (MQ=31)  gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga                   <  2:3607805/100‑1 (MQ=31)    aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAac                 <  1:335735/100‑1 (MQ=33)     gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca                <  1:2136854/100‑1 (MQ=25)     gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca                <  2:1302081/100‑1 (MQ=35)      cTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGATCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAacac               <  1:660261/100‑1 (MQ=25)      cTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAacac               >  2:2382107/1‑100 (MQ=35)      cTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAacac               >  1:2403505/1‑100 (MQ=35)      cTGAACAGGAGAGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACAATAAATCAGTAAGTTGGCAGCATCACCGAGAacac               >  1:2030691/1‑100 (MQ=255)       tGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAAcaca              >  1:184789/1‑100 (MQ=38)       tGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAAcaca              >  2:613488/1‑100 (MQ=38)        gAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAAcaca              <  2:3159707/99‑1 (MQ=38)         aaCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaaa            <  1:3030231/100‑1 (MQ=40)         aaCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaaa            <  1:3622376/100‑1 (MQ=40)         aaCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaaa            <  1:3625024/100‑1 (MQ=40)         aaCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaaa            >  1:2048075/1‑100 (MQ=40)         aaCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCAAACACTAAATCAGTAAGTTGGCAGCAACACCGAGAACACaaa            >  1:951701/1‑100 (MQ=255)          aCAGGAGTGACAGCTGATAGAAACAGAAACCAATGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCAAAAAcacaca            >  1:1610979/1‑97 (MQ=11)           cAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATg          <  1:3043196/100‑1 (MQ=255)           cAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATg          <  2:831118/100‑1 (MQ=255)             ggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATggg        <  2:2202752/100‑1 (MQ=255)             ggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAAACACAAATggg        >  1:1237515/1‑100 (MQ=255)              gaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGc       <  2:1938801/100‑1 (MQ=255)              gaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGc       >  1:1255040/1‑100 (MQ=255)               aggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCt      <  1:1957687/100‑1 (MQ=255)                 ngACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTaa    >  2:1561646/2‑100 (MQ=255)                   aCAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAAtt  >  1:16428/1‑100 (MQ=255)                   aCAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGACAACACAAATGGGCTaa    >  1:3246420/1‑98 (MQ=255)                   |                                                                                                    AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAATT  >  NC_000913/279834‑279951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.