New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3943635NA (NA)43 (0.340) 21/164 NT 70.0% intergenic (+125/‑69) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
?NC_000913 = 4037446 20 (0.140)intergenic (+111/‑73) alaT/rrlA tRNA‑Ala/23S ribosomal RNA of rrnA operon

ATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGG  >  NC_000913/4037347‑4037545
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gttaAATAAAAAATACTTCAGAGTGTACCTGATAAGGTTTACCGAGAAGTCTTGCTCTGTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAC                                                                                                     >  1:2704858‑M2/2‑100 (MQ=255)
aTTAAATAAAAAATACTTTAGATTTTACCTGACAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACAGTGAACAAC                                                                                                     >  1:772634‑M2/1‑100 (MQ=255)
aTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAC                                                                                                     <  1:3252822‑M2/100‑1 (MQ=255)
aTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAC                                                                                                     <  1:2181940‑M2/100‑1 (MQ=255)
aTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAC                                                                                                     <  2:126840‑M2/100‑1 (MQ=255)
 ttAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAC                                                                                                     <  1:1299944‑M2/99‑1 (MQ=255)
    aataaaAAATACTTCAGAGTGTACCTGCAAAGGTTAACTGAGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACaaaa                                                                                                 <  1:3788937‑M2/100‑5 (MQ=255)
      taaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACCGAACAACtttcgt                                                                                               <  1:2366911‑M2/100‑7 (MQ=255)
        aaaaaTACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACGAACAACtttcgttgt                                                                                            <  1:3811612‑M2/100‑10 (MQ=255)
           aaTACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttc                                                                                          >  2:3600310‑M2/1‑89 (MQ=255)
             tACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAATATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcag                                                                                        >  1:1168556‑M2/1‑87 (MQ=255)
             tACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcag                                                                                        >  2:2154315‑M2/1‑87 (MQ=255)
              aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagt                                                                                       >  1:2750655‑M2/1‑86 (MQ=255)
              aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagt                                                                                       >  2:3349055‑M2/1‑86 (MQ=255)
              aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagt                                                                                       >  1:2396200‑M2/1‑86 (MQ=255)
              aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagt                                                                                       >  2:3282327‑M2/1‑86 (MQ=255)
              aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagt                                                                                       >  1:651961‑M2/1‑86 (MQ=255)
              aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagt                                                                                       >  2:3640357‑M2/1‑86 (MQ=255)
              aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagt                                                                                       >  2:1161856‑M2/1‑86 (MQ=255)
              aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcag                                                                                        >  1:1857406‑M2/1‑86 (MQ=255)
              aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcattgttcagt                                                                                       >  1:1762191‑M2/1‑86 (MQ=255)
              aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGATGAAAATTGAAACACCGAACAACtttcgttgttcagt                                                                                       >  1:2062966‑M2/1‑86 (MQ=255)
               cTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTTGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagt                                                                                       >  1:3357190‑M2/1‑85 (MQ=255)
               cTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtg                                                                                      >  2:1332814‑M2/1‑85 (MQ=255)
               cTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtg                                                                                      >  2:877941‑M2/1‑85 (MQ=255)
               cTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCAGAAAATTGAAACACTGAACAACtttcattgttcagtg                                                                                      >  1:2059054‑M2/1‑85 (MQ=255)
                ttCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgt                                                                                     >  2:2769856‑M2/1‑84 (MQ=255)
                ttCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgt                                                                                     <  1:794852‑M2/100‑17 (MQ=255)
                ttCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcattgttcagtgt                                                                                     >  2:3329405‑M2/1‑84 (MQ=255)
                ttCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACCGAACAACtttcgttgttcagtgt                                                                                     >  2:2366928‑M2/1‑84 (MQ=255)
                ttCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACGAACAACtttcgttgttcagtgtt                                                                                    >  2:3811638‑M2/1‑83 (MQ=255)
                 tCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtt                                                                                    >  1:2816451‑M2/1‑83 (MQ=255)
                 tCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtt                                                                                    >  2:574729‑M2/1‑83 (MQ=255)
                 tCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTATTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtt                                                                                    >  1:2815173‑M2/1‑83 (MQ=255)
                  cAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgttt                                                                                   >  2:794859‑M2/1‑82 (MQ=255)
                    gagTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttca                                                                                 >  1:523520‑M2/1‑80 (MQ=255)
                      gtgtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACGAACAACtttcgttgttcagtgtttcaatt                                                                              >  2:1961501‑M2/1‑77 (MQ=255)
                       tgtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATTTTGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttcaat                                                                               >  1:2281008‑M2/1‑77 (MQ=255)
                       tgtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttcaatt                                                                              >  1:1820202‑M2/1‑77 (MQ=255)
                        gtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttcaattt                                                                             >  1:1388606‑M2/1‑76 (MQ=255)
                         tACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttcaatttt                                                                            >  2:2379978‑M2/1‑75 (MQ=255)
                                     ttCACTGCTAAGTTTTGCTCTTTAAAACTCTGGATCCAGCTGAAAATTGAAACACTGAACATCGAAAGTTGTTCGTGAGTCTCTGAAATTTTCGCAacac                                                                <  1:466915/100‑1 (MQ=11)
                                     ttCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAacac                                                                >  2:2642279/1‑100 (MQ=31)
                                      tCACTGCGGAGCTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGACCAACGCAAGTTGTTCGTTAGTCCATCAACCTTTCGCAACACg                                                               >  1:1622213/1‑100 (MQ=11)
                                      tCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACg                                                               >  1:3719948/1‑100 (MQ=32)
                                       cACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACga                                                              >  1:1408673/1‑100 (MQ=32)
                                       cACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTCAAAATTTAAACACTGAACAACGCAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACga                                                              <  1:1571309/100‑1 (MQ=255)
                                         cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCATGCTGAAAATTGAAACACTTAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg                                                            >  1:3218036/1‑100 (MQ=16)
                                         cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg                                                            >  1:843166/1‑100 (MQ=33)
                                         cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg                                                            >  1:1293102/1‑100 (MQ=32)
                                          tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatga                                                           <  1:503490/100‑1 (MQ=32)
                                           gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat                                                          >  2:1937275/1‑100 (MQ=33)
                                           gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat                                                          >  1:3542916/1‑100 (MQ=32)
                                            cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg                                                         >  1:2485885/1‑100 (MQ=33)
                                             gAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTTAAAATTGAAACACTGGACAACGAAAGTTGTTCGTGAGTCTCTCCAATTTTCGCAACACGatgatg                                                         <  1:1661542/99‑1 (MQ=255)
                                             gAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGAtgatga                                                        <  2:2304338/100‑1 (MQ=35)
                                              aaGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGaa                                                       >  2:1132952/1‑100 (MQ=33)
                                                gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc                                                     <  2:986796/100‑1 (MQ=31)
                                                gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc                                                     >  2:2179172/1‑100 (MQ=31)
                                                gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc                                                     <  2:532469/100‑1 (MQ=31)
                                                 ttttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCg                                                    <  1:1725644/100‑1 (MQ=11)
                                                         tttAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACgagagttgttcggtgtttcaattttcagcttgctcaagatttttaaagagcaaatat                                            <  1:3045450‑M2/100‑58 (MQ=255)
                                                            aaaaaTCTGGATCAAGCTGAAAATTGAAACACTGAACAACgaaagttgttcggtgtttcaattttcagcttgatccagatttttaaagagcaaatatctc                                         <  1:275954‑M2/100‑61 (MQ=255)
                                                                    ggATCAAGCTGAAAATTGAAACACTGAACAACgagagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatca                                 <  2:420138‑M2/100‑69 (MQ=255)
                                                                    ggATCAAGCTGAAAATTGAAACACGGAACTACtctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatca                                 >  1:182856‑M2/1‑32 (MQ=255)
                                                                      aTCAAGCTGAAAATTGAAACACTGAACAACgaaagttgttcggtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacc                               <  2:3753926‑M2/100‑71 (MQ=255)
                                                                                aaaTTGAAACACTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgag                     <  2:3386649‑M2/100‑81 (MQ=255)
                                                                                  aTTGAAACACTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtt                   <  2:2969087‑M2/100‑83 (MQ=255)
                                                                                     gAAACACTGAACAACgagagttgttcggtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtttt                 <  1:1794713‑M2/99‑85 (MQ=255)
                                                                                      aaaCACTGAACAACgaaagttgttcggtgtttcaattttcagtttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttga               <  1:1685015‑M2/100‑87 (MQ=255)
                                                                                        acacTGAACAGCgttcgttgttcagtgtttcaattttcagctggatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgaga             >  2:2421854‑M2/1‑12 (MQ=255)
                                                                                        acacTGAACAACgagagttgttcggtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgaga             <  2:2632772‑M2/100‑89 (MQ=255)
                                                                                         cacTGAACAACgagagttgttcagtgtttcaattttcagctcgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagat            <  1:2677654‑M2/100‑90 (MQ=255)
                                                                                         cacTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagat            <  2:721308‑M2/100‑90 (MQ=255)
                                                                                         cacTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagat            <  2:289322‑M2/100‑90 (MQ=255)
                                                                                           cTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatat          <  2:2844374‑M2/100‑92 (MQ=255)
                                                                                             gAACAACtttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatatta        <  2:996282‑M2/100‑94 (MQ=255)
                                                                                             gAACAACtttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatatta        >  2:2985261‑M2/1‑7 (MQ=255)
                                                                                             gAACAACtttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatatta        >  2:2980502‑M2/1‑7 (MQ=255)
                                                                                             gAACAACtttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatatta        <  2:2125081‑M2/100‑94 (MQ=255)
                                                                                             gAACAACtttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatatt         >  1:3251544‑M2/1‑7 (MQ=255)
                                                                                              aacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaa       >  2:1264296‑M2/1‑6 (MQ=255)
                                                                                              aacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaa       >  2:732471‑M2/1‑6 (MQ=255)
                                                                                              aacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaa       >  1:3552030‑M2/1‑6 (MQ=255)
                                                                                               acaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaag      >  1:3512692‑M2/1‑5 (MQ=255)
                                                                                                caactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaagg     <  2:2410171‑M2/100‑97 (MQ=255)
                                                                                                caactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaagg     <  1:742043‑M2/100‑97 (MQ=255)
                                                                                                 aactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggc    >  1:1081559‑M2/1‑3 (MQ=255)
                                                                                                 aactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggc    >  1:1115695‑M2/1‑3 (MQ=255)
                                                                                                 aactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggc    >  2:2827786‑M2/1‑3 (MQ=255)
                                                                                                  actttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggca   >  1:3677756‑M2/1‑2 (MQ=255)
                                                                                                  actttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggca   <  1:1211443‑M2/100‑99 (MQ=255)
                                                                                                   ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag  <  1:3307557‑M2/100‑100 (MQ=255)
                                                                                                   ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag  <  1:76784‑M2/100‑100 (MQ=255)
                                                                                                   ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag  <  1:1376053‑M2/100‑100 (MQ=255)
                                                                                                   ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag  <  2:912647‑M2/100‑100 (MQ=255)
                                                                                                   ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag  >  2:1463514‑M2/1‑1 (MQ=255)
                                                                                                   ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaacatgagttttgagatattaaggcag  <  1:3154402‑M2/100‑100 (MQ=255)
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ATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGG  >  NC_000913/4037347‑4037545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.