New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2560906 =130 (1.070)15 (0.170)
+TTTCTTTGCCTTAATTCCATGAATTCA		 11/144 11.2 13.6% intergenic (+8/‑462) yffL/yffM CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein
?NC_000913 2560978 = 133 (1.100)intergenic (+80/‑390) yffL/yffM CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

AGGCAAAGAAAAGGCGGGAACATTGCCCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2560937‑2560906
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGGGTCAAAAGTTGCCGTTA‑A‑GGTGGGTCAAAAGTTGCCGTTAAGGTGG  >  NC_000913/2560978‑2561028
                                |||||||||||||||||||||||||||                                                     
AGGCAAAGAAAAGGCGGGAACATTGCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGT‑GGTGGGTCAAAAGTTGC             >  2:1672698/1‑100
 GGCAAAGAAAAGGCGGGAACATTGCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGT‑GGTGGGTCAAAAGTTGCC            >  2:1838536/1‑100
   CAAAGAAAAGGCGGGAACATTGCCTGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGT‑GGTGGGTCAAAAGTTGCCGT          >  1:1462301/1‑100
   CAAAGAAAAGGCGGGAACATTGCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGT‑GGTGGGTCAAAAGTTGCCGT          >  2:2580977/1‑100
    AAAGAAAAGGCGGGAACATTGCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGT‑GGTGGGTCAAAAGTTGCCGTT         >  2:1086422/1‑100
     AAGAAAAGGCGGGAACATTGCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGT‑GGTGGGTCAAAAGTTGCCGTTA        >  1:821649/1‑100
     AAGAAAAGGCGGGAACATTGCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTA‑GTGGTGGGTCAAAAGTTGCCGTTA        >  2:241499/1‑100
      AGAAAAGGCGGGAACATTGCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGT‑GGTGGGTCAAAAGTTGCCGTTAA       >  1:1513899/1‑100
       GAAAAGGCGGGAACATTGCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGT‑GGTGGGTCAAAAGTTGCCGTTAAG      >  1:2718894/1‑100
       GAAAAGGCGGGAACATTGCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGT‑GGTGGGTCAAAAGTTGCCGTTAAG      >  2:237646/1‑100
        AAAAGGCGGGAACATTGCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCTGTTAGT‑GGTGGGTCAAAAGTTGCCGTTAAGG     >  1:1657957/1‑100
         AAAGGCGGGAACATTGCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGT‑GGTGGGTCAAAAGTTGCCGTTAAGGT    >  1:1675209/1‑100
         AAAGGCGGGAACATTGCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGT‑GGTGGGTCAAAAGTTGCCATTAAGGT    >  2:2516336/1‑100
          AAGGCGGGAACATTGCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGT‑GGTGGGTCAAAAGTTGCCGTTAAGGTG   >  2:81053/1‑100
           AGGCGGGAACATTGCCCGCCTTTTCTTTGCCTTAATTCCATGAATTCAGGTGGGTCAAAAGTTGCCGTTAGT‑GGTGGGTCAAAAGTTGCCGTTAAGGTGG  >  1:1385951/1‑100
                                |||||||||||||||||||||||||||                                                     
AGGCAAAGAAAAGGCGGGAACATTGCCCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2560937‑2560906
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGGGTCAAAAGTTGCCGTTA‑A‑GGTGGGTCAAAAGTTGCCGTTAAGGTGG  >  NC_000913/2560978‑2561028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.