| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 900753 = | NA (NA) | 8 (0.070) | 6/164 | NT | NA | noncoding (5/87 nt) | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 900783 = | NA (NA) | noncoding (35/87 nt) | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GCGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/900858‑900753‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCG > NC_000913/900783‑900881 GCGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTA > 1:1659011/1‑100 GTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATC < 2:3084806/100‑1 GTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTACCTGTGCCGGATGCGGCGGGGACGCCTTATC < 1:2996768/100‑1 TACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCC > 1:104647/1‑100 TACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCC > 2:55752/1‑100 TACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCC > 2:3392791/1‑100 ACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCG < 1:1092909/100‑1 CATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATGAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGG > 1:868612/1‑100 CATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGG > 1:1149059/1‑100 CATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGG > 2:2650920/1‑100 CATTCGCCGGGGGGTTTTGTACGTCTTATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTTCCGGATGCGGCGGGGAAGCCTTATCCG < 1:859794/99‑1 ATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGC < 2:2544450/100‑1 GACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTA‑‑CATAGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTA > 2:151092/1‑100 ACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACC > 1:873105/1‑100 GTGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCCTATCAGACCTACAAAACCCCCCGGCG > 1:137160/1‑99 TGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTCCAAAACCCCCCGGCGAA > 1:1916235/1‑100 TGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAA > 1:1219889/1‑100 TGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAA > 1:1916102/1‑100 GCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAAT > 1:2957172/1‑100 CCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATG > 2:2094616/1‑100 CCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCG < 2:1836071/100‑1 CCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCG > 1:2007482/1‑100 CGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGT > 2:2583011/1‑100 CGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGT < 2:3022191/100‑1 CGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGT > 1:1138772/1‑100 GGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTT > 1:846646/1‑100 GGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTT > 2:3025229/1‑100 GCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTC < 2:2593318/100‑1 GCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTC < 1:2558650/100‑1 CACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCG < 2:2797898/100‑1 GCGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/900858‑900753‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCG > NC_000913/900783‑900881 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |