New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2204457	83 (0.650)	16 (0.140)	10/156	NT	15.4%	intergenic (+168/‑139)	yehK/yehL	uncharacterized protein/putative hexameric AAA+ MoxR family ATPase
	?	NC_000913	= 2204480	103 (0.920)					intergenic (+191/‑116)	yehK/yehL	uncharacterized protein/putative hexameric AAA+ MoxR family ATPase

ATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2204348‑2204457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtaaataaaaAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCACGGC  <  NC_000913/2204480‑2204382                                                                                                                                                                                                                   ATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATA                                                                                                               <  2:428585/100‑1  TAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAG                                                                                                              >  2:985191/1‑100  TAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAG                                                                                                              <  2:2111299/100‑1  TAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAG                                                                                                              <  1:533184/100‑1     ATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAA                                                                                                           <  2:1244797/100‑1     ATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAA                                                                                                           <  1:3335906/100‑1      TCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAA                                                                                                          <  1:1957801/100‑1      TCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAA                                                                                                          >  2:2642649/1‑100       CTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAAT                                                                                                         >  2:2677018/1‑100        TCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATA                                                                                                        <  2:1744433/100‑1        TCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATA                                                                                                        >  1:784964/1‑100         CATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAA                                                                                                       <  2:337860/100‑1         CATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAA                                                                                                       >  1:260378/1‑100          ATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCATTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAA                                                                                                      >  2:1040605/1‑100                                CCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGT                                                                                <  2:459981/100‑1                                CCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGT                                                                                >  1:3044361/1‑100                                        GGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTT                                                                          <  1:622705/98‑1                                         GTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATT                                                                       <  2:2653554/100‑1                                         GTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATT                                                                       <  1:940489/100‑1                                          TTATAATTCGTTCGGTGGAACAAGATGTTGCAAAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTT                                                                      <  1:2120632/100‑1                                            ATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTAC                                                                    <  2:1702310/100‑1                                            ATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTAC                                                                    <  2:3320591/100‑1                                             TAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACT                                                                   <  2:3044381/100‑1                                             TAATTCGTTCGTTGGAACACGATGTTGAACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACT                                                                   <  1:2619938/100‑1                                               ATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTAT                                                                 <  1:2383422/100‑1                                               ATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTAT                                                                 <  1:1482234/100‑1                                                      CGTTGGAACATGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTTGTCAGGCAGGTTCTTTTATTTACTATTTTCAGG                                                          <  1:2338101/100‑1                                                      CGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAGAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGG                                                          <  2:1765065/100‑1                                                        TTGGAACAGGATGTTGCACAGGCTGTGGTGTTTGGCGTGAAAATAGTAAATAAAAAAACCTGCTGGGGAGGCAGGTTCTTTTATTTACTATTTTCAGG                                                          <  1:3056832/98‑1                                                                           AGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCA                                     <  2:966118/100‑1                                                                                                    AGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTA            <  1:1630358/100‑1                                                                                                    AGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTA            >  1:1529681/1‑100                                                                                                    AGTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTA            <  1:3472541/100‑1                                                                                                     GTAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTCTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTAT           <  1:3475935/100‑1                                                                                                      tccgatctAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATA          <  2:3464397/92‑1                                                                                                      TAAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATA          <  2:2906408/100‑1                                                                                                       AAATAAAATAACCTGCTGGTGATGCAGGTGCTTTTATCTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAAGTATAA         <  1:2402668/100‑1                                                                                                       AAATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAA         >  2:1985519/1‑100                                                                                                        AATAAAAAAACCTGCTGGTGAGGCAGGTACTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAAC        >  2:2073687/1‑100                                                                                                         ATAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACC       >  2:784968/1‑100                                                                                                          TAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCA      >  1:856077/1‑100                                                                                                          TAAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCA      >  2:3426893/1‑100                                                                                                           AAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCAC     >  2:3046961/1‑100                                                                                                           AAAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTAATATTTTCAGGCCTAACGCCACAGCTTGTGCAACATCGTGTTCCAACGAACGAATTATAACCAC     >  1:823434/1‑100                                                                                                            AAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCACG    <  1:3149223/100‑1                                                                                                            AAAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACGATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCACn    <  2:3389174/100‑2                                                                                                             AAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCACGG   <  1:1790914/100‑1                                                                                                             AAAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCACGG   <  1:517219/100‑1                                                                                                              AAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAAgatcgga  >  1:3464372/1‑93                                                                                                              AAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCACGGC  <  2:2625196/100‑1                                                                                                                                                                                                                   ATAAATCTCATTATCTTAATTGCAACGGGGTCCAGCCGTGGTTATAATTCGTTCGTTGGAACACGATGTTGCACAGGCTGTGGTGTTAGGCCTGAAAATAGTAAATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2204348‑2204457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtaaataaaaAAACCTGCTGGTGAGGCAGGTTCTTTTATTTACTATTTTCAGGCCTAACACCACAGCCTGTGCAACATCGTGTTCCAACGAACGAATTATAACCACGGC  <  NC_000913/2204480‑2204382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.