New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4548883 =	132 (1.030)	8 (0.070)	5/160	NT	6.6%	coding (76/903 nt)	fimH	minor component of type 1 fimbriae
	?	NC_000913	4548916 =	109 (0.950)					coding (109/903 nt)	fimH	minor component of type 1 fimbriae
Rejected: Frequency below cutoff threshold.

GTCGAAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4548989‑4548883 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attggcggtGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTA  >  NC_000913/4548916‑4549013                                                                                                                                                                                                               GTCGAAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCAT                                                                                                           >  2:2913833/1‑100   CGAAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTG                                                                                                         >  1:2618047/1‑100    GAAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGG                                                                                                        <  1:2307575/100‑1    GAAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGG                                                                                                        >  2:1123974/1‑100    GAAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGG                                                                                                        >  2:2257888/1‑100    GAAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGG                                                                                                        <  2:3332279/100‑1    GAAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGG                                                                                                        >  2:369198/1‑100     AAAGATCCACGACCAGGTTTTGCCCCACATTCGCGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGC                                                                                                       <  1:545389/100‑1     AAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGC                                                                                                       <  1:1276849/100‑1     AAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGC                                                                                                       <  2:1317273/100‑1      AAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGCG                                                                                                      >  2:122355/1‑100       AGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGCGG                                                                                                     <  2:2523860/100‑1       AGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGCGG                                                                                                     <  2:1169790/100‑1        GATCCACGACCAGGTTTTGCTCCAGATTCCCGACGGGCGTAAGCTTTACATCACCATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGCGGT                                                                                                    <  1:2268521/100‑1        GATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGCGGT                                                                                                    <  1:100705/100‑1          TCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGCGGctt                                                                                                  >  1:785164/1‑97                                                                       TGCCACCGCCAATAGGGATAGCGGTACCATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTG                                     >  1:2229564/1‑100                                                                        GCCACCGCCAATAGGGATAGCGGTACCATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGG                                    >  1:1230106/1‑100                                                                          CACCGCCAATAGGGATAGCGGTACCATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGAT                                  >  2:1045/1‑100                                                                          CACCGCCAATAGGGATAGCGGTACCATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGAT                                  >  2:1577935/1‑100                                                                          CACCGCCAATAGGGATAGCGGTACCATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGAT                                  >  1:2285968/1‑100                                                                           ACCGCCAATAGGGATAGCGGTACCATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATC                                 >  1:2674649/1‑100                                                                           ACCGCCAATAGGGATAGCGGTACCATTGGCGATGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGCATC                                 >  1:2115579/1‑100                                                                              GCCAATAGGGATAGCGGTACCATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTT                              >  1:3422955/1‑100                                                                                              ttcgatcTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTG              <  1:875102/93‑1                                                                                              taaaCATTGGCGCTGCCACCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTG              >  1:1314530/5‑100                                                                                                     TGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAAC       >  2:2041738/1‑100                                                                                                      GGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGagatcgga      >  2:875107/1‑92                                                                                                      GGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACG      <  2:1652859/100‑1                                                                                                      GGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACG      >  2:1413354/1‑100                                                                                                      GGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACG      >  1:3472881/1‑100                                                                                                        CGGTGGCAGCGCCAATGTTTATGTAAGCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGAT    >  2:2156309/1‑100                                                                                                        CGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGTTCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGAT    <  2:1355326/100‑1                                                                                                        CGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGAT    <  2:2547929/100‑1                                                                                                         GGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATT   >  1:1882773/1‑100                                                                                                          GTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAACCCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTA  <  2:2864590/100‑1                                                                                                                                                                                                               GTCGAAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4548989‑4548883 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attggcggtGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTA  >  NC_000913/4548916‑4549013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.