New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 279841	NA (NA)	20 (0.170)	9/168	NT	NA	noncoding (90/768 nt)	IS1	repeat region
	?	NC_000913	= 279852	NA (NA)					noncoding (79/768 nt)	IS1	repeat region

AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAA  >  NC_000913/279834‑279940        |                                                                                                    aGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgag         <  2:1191387/100‑1 (MQ=11)  gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga        <  1:898376/100‑1 (MQ=31)  gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga        >  2:237484/1‑100 (MQ=31)   tAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGaa       <  1:1983588/100‑1 (MQ=32)    agttGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAac      >  2:2806243/4‑100 (MQ=18)    aGCTGAACAGGAGGGACAGCTGATAGAAACTGAAGCTACTGGAACACATCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAac      <  1:552831/100‑1 (MQ=11)    aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCTACTGGAGCACCTCAAACACACCATCATACACTAATTCAGTAAGTTGGCAGCATCACCGAGAac      <  1:308760/100‑1 (MQ=255)    aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCGTACACTAAATCAGTAAGTTGGCAGCATCACCGAGAac      >  2:2323081/1‑100 (MQ=18)    aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgagatc      >  1:874228/1‑98 (MQ=14)     gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca     >  1:116393/1‑100 (MQ=35)     gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca     >  2:1510514/1‑100 (MQ=35)     gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca     >  2:1638375/1‑100 (MQ=35)        gAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaa  >  2:71094/1‑100 (MQ=38)        |                                                                                                    AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAA  >  NC_000913/279834‑279940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.